106409

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3456344..3456962 Replicon chromosome
Accession NZ_CP029687
Organism Escherichia coli strain E706

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag DMI84_RS18465 Protein ID WP_001291435.1
Coordinates 3456744..3456962 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag DMI84_RS18460 Protein ID WP_000344800.1
Coordinates 3456344..3456718 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DMI84_RS18450 3451433..3452626 + 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
DMI84_RS18455 3452649..3455798 + 3150 WP_001132469.1 multidrug efflux RND transporter permease subunit -
DMI84_RS18460 3456344..3456718 + 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
DMI84_RS18465 3456744..3456962 + 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
DMI84_RS18470 3457134..3457685 + 552 WP_000102564.1 maltose O-acetyltransferase -
DMI84_RS18475 3457801..3458271 + 471 WP_000136192.1 YlaC family protein -
DMI84_RS18480 3458435..3459985 + 1551 WP_001310610.1 cyclic-guanylate-specific phosphodiesterase PdeB -
DMI84_RS18485 3460027..3460380 - 354 WP_000878140.1 DUF1428 domain-containing protein -
DMI84_RS18495 3460759..3461070 + 312 WP_000409911.1 MGMT family protein -
DMI84_RS18500 3461101..3461673 - 573 WP_000779831.1 YbaY family lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T106409 WP_001291435.1 NZ_CP029687:3456744-3456962 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

>T106409 NZ_CP029687:3456744-3456962 [Escherichia coli]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTGTACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT106409 WP_000344800.1 NZ_CP029687:3456344-3456718 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp

>AT106409 NZ_CP029687:3456344-3456718 [Escherichia coli]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGCCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTAAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References