Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2018308..2018579 | Replicon | chromosome |
| Accession | NZ_CP029687 | ||
| Organism | Escherichia coli strain E706 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2018438..2018541 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2018308..2018579 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DMI84_RS10790 | 2014863..2015525 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| DMI84_RS10795 | 2015549..2016205 | - | 657 | WP_063121046.1 | carbon-nitrogen hydrolase family protein | - |
| DMI84_RS10800 | 2016307..2016537 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DMI84_RS10805 | 2016676..2017050 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DMI84_RS10810 | 2017054..2017926 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| DMI84_RS10815 | 2017939..2018280 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2018308..2018579 | - | 272 | - | - | Antitoxin |
| - | 2018438..2018541 | + | 104 | - | - | Toxin |
| DMI84_RS10820 | 2018676..2019332 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| DMI84_RS10825 | 2019333..2019524 | - | 192 | WP_001338167.1 | YebW family protein | - |
| DMI84_RS10830 | 2019629..2019865 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| DMI84_RS10835 | 2019983..2021422 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T106399 NZ_CP029687:2018438-2018541 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT106399 NZ_CP029687:c2018579-2018308 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
