Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2693090..2693235 | Replicon | chromosome |
| Accession | NZ_CP029682 | ||
| Organism | Salmonella sp. FORC89 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2693092..2693195 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2693090..2693235 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC89_RS13240 | 2688290..2688508 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| FORC89_RS13245 | 2688810..2688908 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| FORC89_RS13250 | 2689227..2691206 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| FORC89_RS13255 | 2691620..2691898 | + | 279 | WP_001575998.1 | excisionase | - |
| FORC89_RS13260 | 2691873..2692952 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2693090..2693235 | + | 146 | - | - | Antitoxin |
| - | 2693092..2693195 | - | 104 | - | - | Toxin |
| FORC89_RS13265 | 2693335..2693688 | - | 354 | WP_000722370.1 | YebY family protein | - |
| FORC89_RS13270 | 2693705..2694580 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| FORC89_RS13275 | 2694581..2694955 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| FORC89_RS13280 | 2695093..2695323 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| FORC89_RS13285 | 2695431..2696087 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| FORC89_RS13290 | 2696111..2696809 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sodCI | 2657062..2698897 | 41835 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T106354 NZ_CP029682:c2693195-2693092 [Salmonella sp. FORC89]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT106354 NZ_CP029682:2693090-2693235 [Salmonella sp. FORC89]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
