106055

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 146396..148122 Replicon chromosome
Accession NZ_CP029640
Organism Paraburkholderia dokdonella strain DCT13 isolate rhisosphere

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag DMB87_RS00705 Protein ID WP_129560964.1
Coordinates 146396..147046 (+) Length 217 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag DMB87_RS00710 Protein ID WP_129560965.1
Coordinates 147046..148122 (+) Length 359 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DMB87_RS00685 141526..141747 + 222 WP_129560960.1 DUF3018 family protein -
DMB87_RS00690 142285..142611 + 327 WP_129560961.1 helix-turn-helix domain-containing protein -
DMB87_RS00695 142650..145190 + 2541 WP_129560962.1 N-6 DNA methylase -
DMB87_RS00700 145183..146403 + 1221 WP_160113433.1 restriction endonuclease subunit S -
DMB87_RS00705 146396..147046 + 651 WP_129560964.1 DUF4433 domain-containing protein Toxin
DMB87_RS00710 147046..148122 + 1077 WP_129560965.1 macro domain-containing protein Antitoxin
DMB87_RS00715 148132..151395 + 3264 WP_129560966.1 type I restriction endonuclease subunit R -
DMB87_RS00720 151395..152102 + 708 WP_129560967.1 M48 family metallopeptidase -
DMB87_RS00725 152462..152551 + 90 Protein_137 DUF3387 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(16-216)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 217 a.a.        Molecular weight: 25011.49 Da        Isoelectric Point: 7.5708

>T106055 WP_129560964.1 NZ_CP029640:146396-147046 [Paraburkholderia dokdonella]
MANHYPNLNPDKALIWRIVHRDNLQWILDNGLHCGNSAVKAPGWVSIGNPELIDKRANHPVPRPPGGLLNDYVPFYFTPF
SPMLRNIHTGWGGIQKRSNEEIVILVSSLHHIAGQGLPFLFTDSHAYYQWANFYSDVAYLDKIDWPLLQRRDFKRDPDDP
AKFERYQAEALIHQHLPVSGLLGVVCYTEQLKQRIEQEIQVRNLNLPVYARTGWYF

Download         Length: 651 bp

>T106055 NZ_CP029640:146396-147046 [Paraburkholderia dokdonella]
ATGGCTAATCACTATCCCAACCTCAACCCTGACAAGGCCCTGATCTGGCGCATCGTTCACCGCGACAATCTGCAGTGGAT
TCTGGATAATGGCCTGCACTGTGGCAACAGCGCTGTGAAAGCGCCGGGCTGGGTGAGTATCGGTAACCCAGAACTGATCG
ACAAGCGTGCCAATCACCCGGTGCCGCGGCCACCGGGCGGCTTGCTGAACGACTACGTACCGTTCTACTTCACACCCTTT
TCGCCCATGCTGCGGAATATCCACACCGGCTGGGGCGGCATCCAGAAGCGATCGAACGAGGAAATCGTGATCCTGGTGTC
TAGTCTGCACCACATTGCCGGGCAAGGCTTGCCGTTTTTGTTTACCGATAGCCATGCCTATTACCAGTGGGCAAATTTTT
ACTCAGATGTGGCCTACCTCGACAAGATCGATTGGCCCTTGCTGCAACGGCGGGACTTCAAGCGCGACCCGGACGACCCT
GCCAAGTTTGAGCGCTATCAGGCCGAGGCGTTGATCCATCAACATTTGCCGGTGAGCGGACTTCTCGGCGTCGTGTGCTA
TACGGAACAATTGAAGCAACGCATTGAACAGGAGATTCAGGTCCGCAATCTGAACCTGCCGGTTTATGCCCGAACAGGGT
GGTATTTCTGA

Antitoxin


Download         Length: 359 a.a.        Molecular weight: 40517.49 Da        Isoelectric Point: 6.5090

>AT106055 WP_129560965.1 NZ_CP029640:147046-148122 [Paraburkholderia dokdonella]
MITFTQGNLLEARAEALVNTVNTVGVMGKGIALMFKERFDENFRRYAAACKAKEVRTGKMFVTPVHELDGPHWIVNFPTK
QHWRAPSRMEWIIEGLQDLRHFLIEQQVKSIAIPPLGAGNGGLEWADVREQIELTLGDLDIDILVFEPTKQYQNVAKRAG
VEKLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERAIERYNPGDNPLNLQFAPHKYGPYANRLDHLLNNLDGSYLH
SEKRISDADPLDVIWFDDERKTFVQTYLKSEARAYTQALESTAALIDGFESPFGMELLATVDWLLAREGVAPTVPALRKG
LRHWRGGPDAGARKDRLFDDRALGIALERLTQAAPAIT

Download         Length: 1077 bp

>AT106055 NZ_CP029640:147046-148122 [Paraburkholderia dokdonella]
ATGATTACATTCACTCAAGGCAATTTGTTGGAGGCTCGCGCTGAGGCTCTGGTCAACACTGTCAACACCGTTGGGGTGAT
GGGCAAGGGCATCGCGCTGATGTTCAAGGAGCGTTTTGACGAGAACTTCCGCCGTTACGCCGCCGCCTGCAAGGCCAAGG
AAGTACGGACTGGTAAGATGTTTGTGACGCCGGTGCACGAGCTGGATGGGCCGCACTGGATCGTCAACTTCCCCACCAAG
CAACACTGGCGCGCACCGTCGCGCATGGAATGGATCATTGAGGGCTTGCAGGATCTGAGGCACTTCTTGATCGAGCAACA
AGTTAAGTCCATCGCCATCCCGCCGCTGGGTGCCGGTAACGGTGGCCTGGAGTGGGCCGACGTGCGCGAGCAGATCGAGC
TGACATTGGGTGATCTGGACATCGACATCCTGGTGTTCGAGCCCACTAAGCAATACCAGAACGTAGCCAAGCGCGCCGGG
GTCGAGAAGCTAACGCCGGCCCGAGCGCTGATTGCCGAGCTGGTGCGGCGGTACTGGGTGTTGGGCATGGAATGCAGCCT
CCTGGAGATTCAGAAGCTGGCGTGGTTTCTGGAGCGTGCGATTGAGCGCTACAACCCGGGTGACAATCCGCTGAACCTGC
AGTTTGCACCGCACAAGTACGGGCCCTATGCCAACCGGCTCGACCACCTACTGAACAATCTGGATGGCAGCTATTTGCAC
TCGGAGAAGCGCATCAGCGACGCCGATCCCCTAGATGTGATCTGGTTTGACGACGAGCGCAAGACTTTTGTGCAGACCTA
TCTCAAGAGCGAAGCCAGGGCCTACACGCAGGCACTGGAATCCACTGCGGCGCTGATCGATGGCTTTGAGTCGCCCTTTG
GCATGGAACTGTTGGCGACGGTGGACTGGCTGCTGGCCCGCGAAGGAGTCGCGCCCACCGTGCCTGCCTTGCGCAAAGGG
CTGCGCCATTGGCGAGGCGGCCCGGATGCCGGCGCGCGCAAGGATCGTCTCTTTGACGACCGAGCGCTGGGCATTGCGCT
TGAACGCCTGACACAAGCTGCGCCCGCAATTACGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References