Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-YefM
Location 5164368..5164873 Replicon chromosome
Accession NZ_CP029608
Organism Pseudomonas kribbensis strain 46-2

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag DLD99_RS23520 Protein ID WP_114885380.1
Coordinates 5164619..5164873 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag DLD99_RS23515 Protein ID WP_114885378.1
Coordinates 5164368..5164622 (+) Length 85 a.a.

Genomic Context

DLD99_RS23495DLD99_RS23500DLD99_RS23505DLD99_RS23510DLD99_RS23515DLD99_RS23520DLD99_RS23530DLD99_RS23535DLD99_RS23540DLD99_RS23490DLD99_RS23525DLD99_RS23545
Location: 5160526..5160879 (354 bp)
Type: Others
Protein ID: WP_114885370.1
Location: 5161012..5161755 (744 bp)
Type: Others
Protein ID: WP_114885372.1
Location: 5161828..5163747 (1920 bp)
Type: Others
Protein ID: WP_114885374.1
Location: 5163782..5164150 (369 bp)
Type: Others
Protein ID: WP_114885376.1
Location: 5164368..5164622 (255 bp)
Type: Antitoxin
Protein ID: WP_114885378.1
Location: 5164619..5164873 (255 bp)
Type: Toxin
Protein ID: WP_114885380.1
Location: 5166157..5167062 (906 bp)
Type: Others
Protein ID: WP_114885384.1
Location: 5167120..5167524 (405 bp)
Type: Others
Protein ID: Protein_4604
Location: 5167588..5168103 (516 bp)
Type: Others
Protein ID: WP_114885385.1
Location: 5159659..5160408 (750 bp)
Type: Others
Protein ID: WP_114885368.1
Location: 5164882..5166054 (1173 bp)
Type: Others
Protein ID: WP_114885382.1
Location: 5168122..5168826 (705 bp)
Type: Others
Protein ID: WP_114885387.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
DLD99_RS234905159659..5160408-750WP_114885368.1hypothetical protein-
DLD99_RS234955160526..5160879+354WP_114885370.1hypothetical protein-
DLD99_RS235005161012..5161755+744WP_114885372.1hypothetical protein-
DLD99_RS235055161828..5163747+1920WP_114885374.1alkaline phosphatase family protein-
DLD99_RS235105163782..5164150+369WP_114885376.1hypothetical protein-
DLD99_RS235155164368..5164622+255WP_114885378.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
DLD99_RS235205164619..5164873+255WP_114885380.1Txe/YoeB family addiction module toxinToxin
DLD99_RS235255164882..5166054-1173WP_114885382.1aspartate aminotransferase family protein-
DLD99_RS235305166157..5167062+906WP_114885384.1LysR family transcriptional regulator-
DLD99_RS235355167120..5167524+405Protein_4604GNAT family N-acetyltransferase-
DLD99_RS235405167588..5168103+516WP_114885385.1hypothetical protein-
DLD99_RS235455168122..5168826-705WP_114885387.1peptide-methionine (S)-S-oxide reductase MsrA-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 9983.53 Da        Isoelectric Point: 8.4955

>T106007 WP_114885380.1 NZ_CP029608:5164619-5164873 [Pseudomonas kribbensis]
MKIEFTPTGWEDYLWFQQNDKAGLKRINLLIKAIQRQPFEGLGKPEPLKHNMSGFWSRRITAEHRLVYAIEDGEVCVITC
RYHY

Download         Length: 255 bp

>T106007 NZ_CP029608:5164619-5164873 [Pseudomonas kribbensis]
ATGAAAATCGAGTTCACGCCAACCGGGTGGGAAGACTACTTATGGTTTCAGCAGAACGATAAGGCCGGTCTCAAACGCAT
CAATCTGTTGATCAAAGCGATCCAACGACAACCCTTCGAAGGACTTGGCAAACCCGAGCCGCTCAAGCACAACATGAGCG
GCTTCTGGTCCCGACGGATAACTGCCGAACATCGTTTGGTCTATGCAATTGAAGACGGTGAAGTCTGCGTCATCACGTGC
AGATATCACTACTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9516.97 Da        Isoelectric Point: 7.2027

>AT106007 WP_114885378.1 NZ_CP029608:5164368-5164622 [Pseudomonas kribbensis]
MHTINYTTARAHLAETMDRVNEDRAPLLITRQKGEPVVMMSLAEYNAMEETAYLLRSPANAERLIKSIGEMRAGKAKARQ
LIEE

Download         Length: 255 bp

>AT106007 NZ_CP029608:5164368-5164622 [Pseudomonas kribbensis]
ATGCACACCATCAACTACACCACGGCCCGGGCTCACCTGGCGGAAACCATGGACCGCGTGAACGAAGATCGCGCCCCGCT
GCTGATCACCCGCCAAAAAGGTGAACCTGTTGTCATGATGTCTCTGGCTGAATACAACGCGATGGAAGAAACGGCATATC
TGCTGCGTTCTCCAGCCAACGCAGAGCGCTTGATCAAATCGATTGGCGAAATGCGTGCAGGAAAAGCCAAAGCCAGGCAA
CTGATCGAAGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References