Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3475698..3475843 | Replicon | chromosome |
| Accession | NZ_CP029590 | ||
| Organism | Klebsiella pneumoniae strain DA33144 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3475734..3475836 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3475698..3475843 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLJ67_RS17360 | 3470828..3472888 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| DLJ67_RS17365 | 3472892..3473551 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DLJ67_RS17370 | 3473630..3473860 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DLJ67_RS17375 | 3473973..3474347 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DLJ67_RS17380 | 3474351..3475220 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| DLJ67_RS17385 | 3475237..3475575 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 3475698..3475843 | - | 146 | - | - | Antitoxin |
| - | 3475734..3475836 | + | 103 | - | - | Toxin |
| DLJ67_RS28580 | 3476212..3476355 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| DLJ67_RS17395 | 3476460..3477428 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| DLJ67_RS17400 | 3477585..3478238 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| DLJ67_RS17405 | 3478235..3478426 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DLJ67_RS17410 | 3478524..3478763 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DLJ67_RS17415 | 3478879..3480312 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T105959 NZ_CP029590:3475734-3475836 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT105959 NZ_CP029590:c3475843-3475698 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
