Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5407590..5407735 | Replicon | chromosome |
| Accession | NZ_CP029582 | ||
| Organism | Klebsiella pneumoniae strain DA33140 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5407597..5407699 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5407590..5407735 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLJ83_RS26830 | 5403121..5404554 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DLJ83_RS26835 | 5404670..5404909 | + | 240 | WP_002911393.1 | YebV family protein | - |
| DLJ83_RS26840 | 5405007..5405198 | + | 192 | WP_002911395.1 | YebW family protein | - |
| DLJ83_RS26845 | 5405195..5405848 | - | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| DLJ83_RS26850 | 5406005..5406973 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| DLJ83_RS29460 | 5407078..5407221 | + | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| - | 5407590..5407735 | + | 146 | - | - | Antitoxin |
| - | 5407597..5407699 | - | 103 | - | - | Toxin |
| DLJ83_RS26860 | 5407858..5408196 | - | 339 | WP_002911404.1 | YebY family protein | - |
| DLJ83_RS26865 | 5408213..5409082 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| DLJ83_RS26870 | 5409086..5409460 | - | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| DLJ83_RS26875 | 5409573..5409803 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DLJ83_RS26880 | 5409882..5410541 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DLJ83_RS26885 | 5410545..5412605 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T105921 NZ_CP029582:c5407699-5407597 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT105921 NZ_CP029582:5407590-5407735 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
