Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 369630..369901 | Replicon | chromosome |
| Accession | NZ_CP029579 | ||
| Organism | Escherichia coli strain DA33137 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 369668..369771 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 369630..369901 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLJ64_RS01990 | 366787..368226 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DLJ64_RS01995 | 368344..368580 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DLJ64_RS02000 | 368685..368876 | + | 192 | WP_001296140.1 | YebW family protein | - |
| DLJ64_RS02005 | 368877..369533 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 369630..369901 | + | 272 | - | - | Antitoxin |
| - | 369668..369771 | - | 104 | - | - | Toxin |
| DLJ64_RS02010 | 369929..370270 | - | 342 | WP_001520705.1 | YebY family protein | - |
| DLJ64_RS02015 | 370283..371155 | - | 873 | WP_110074591.1 | copper homeostasis membrane protein CopD | - |
| DLJ64_RS02020 | 371159..371533 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| DLJ64_RS02025 | 371672..371902 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DLJ64_RS02030 | 372004..372660 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| DLJ64_RS02035 | 372684..373346 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T105865 NZ_CP029579:c369771-369668 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT105865 NZ_CP029579:369630-369901 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
