Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YoeB-YefM
Location 3975261..3975763 Replicon chromosome
Accession NZ_CP029488
Organism Salinisphaera sp. LB1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag SALB1_RS17825 Protein ID WP_109995073.1
Coordinates 3975261..3975515 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag SALB1_RS17830 Protein ID WP_109995074.1
Coordinates 3975512..3975763 (-) Length 84 a.a.

Genomic Context

SALB1_RS17810SALB1_RS17815SALB1_RS17820SALB1_RS17835SALB1_RS17840SALB1_RS17845SALB1_RS17850SALB1_RS17855SALB1_RS17805SALB1_RS17825SALB1_RS17830SALB1_RS18910
Location: 3971421..3972584 (1164 bp)
Type: Others
Protein ID: WP_109995072.1
Location: 3972684..3973991 (1308 bp)
Type: Others
Protein ID: WP_109995522.1
Location: 3974018..3974746 (729 bp)
Type: Others
Protein ID: WP_109995523.1
Location: 3976489..3977451 (963 bp)
Type: Others
Protein ID: WP_109995075.1
Location: 3977560..3978114 (555 bp)
Type: Others
Protein ID: WP_109995076.1
Location: 3978107..3978550 (444 bp)
Type: Others
Protein ID: WP_109995077.1
Location: 3978645..3979145 (501 bp)
Type: Others
Protein ID: WP_109995078.1
Location: 3979316..3980293 (978 bp)
Type: Others
Protein ID: WP_109995079.1
Location: 3970884..3971282 (399 bp)
Type: Others
Protein ID: WP_147420775.1
Location: 3975261..3975515 (255 bp)
Type: Toxin
Protein ID: WP_109995073.1
Location: 3975512..3975763 (252 bp)
Type: Antitoxin
Protein ID: WP_109995074.1
Location: 3975962..3976276 (315 bp)
Type: Others
Protein ID: WP_145961379.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
SALB1_RS178053970884..3971282-399WP_147420775.1hypothetical protein-
SALB1_RS178103971421..3972584+1164WP_109995072.1acetylornithine deacetylase-
SALB1_RS178153972684..3973991+1308WP_109995522.1amino-acid N-acetyltransferase-
SALB1_RS178203974018..3974746+729WP_109995523.116S rRNA (uracil(1498)-N(3))-methyltransferase-
SALB1_RS178253975261..3975515-255WP_109995073.1Txe/YoeB family addiction module toxinToxin
SALB1_RS178303975512..3975763-252WP_109995074.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
SALB1_RS189103975962..3976276-315WP_145961379.1hypothetical protein-
SALB1_RS178353976489..3977451+963WP_109995075.1glutathione synthase-
SALB1_RS178403977560..3978114+555WP_109995076.1YqgE/AlgH family protein-
SALB1_RS178453978107..3978550+444WP_109995077.1Holliday junction resolvase RuvX-
SALB1_RS178503978645..3979145+501WP_109995078.1bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR-
SALB1_RS178553979316..3980293+978WP_109995079.1aspartate carbamoyltransferase catalytic subunit-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10146.66 Da        Isoelectric Point: 9.8548

>T105718 WP_109995073.1 NZ_CP029488:c3975515-3975261 [Salinisphaera sp. LB1]
MKLTFSEHAWEDYLYWQKTEKKTLRRINQLIKEIQRTPFEGIGKPEPLKHGLSGYGSRRINDEHRLVYKVTEDALLIAQL
RYHY

Download         Length: 255 bp

>T105718 NZ_CP029488:c3975515-3975261 [Salinisphaera sp. LB1]
ATGAAACTCACCTTTTCCGAGCATGCCTGGGAAGACTACCTCTACTGGCAGAAAACGGAAAAAAAGACCCTGCGCCGCAT
CAATCAGCTCATCAAAGAGATTCAGCGAACGCCGTTCGAGGGTATCGGCAAACCGGAGCCGCTCAAGCACGGCCTGTCCG
GATACGGGTCTCGACGCATCAATGACGAACATCGGCTCGTGTACAAGGTAACCGAGGACGCACTTCTTATTGCGCAATTG
CGATATCACTACTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9264.50 Da        Isoelectric Point: 4.5037

>AT105718 WP_109995074.1 NZ_CP029488:c3975763-3975512 [Salinisphaera sp. LB1]
MDAISYTAARTHLAKTMEQVCDDHAPVIITRSKAASVVMMSLEDYEALQETAYLLRAPRNARRLLESVAELEQGGGEERE
LLE

Download         Length: 252 bp

>AT105718 NZ_CP029488:c3975763-3975512 [Salinisphaera sp. LB1]
ATGGACGCCATCAGCTACACGGCCGCCAGAACCCACCTGGCAAAAACAATGGAACAGGTCTGTGACGACCACGCCCCCGT
TATCATCACCAGAAGCAAGGCCGCTTCGGTGGTGATGATGTCCCTGGAAGACTATGAAGCCCTTCAGGAGACTGCATACC
TGTTGCGTGCGCCCAGGAACGCGCGCCGTCTGCTCGAATCGGTTGCCGAGCTGGAACAAGGGGGCGGCGAGGAGAGGGAG
CTTCTTGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References