Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 399986..400502 Replicon chromosome
Accession NZ_CP029482
Organism Pseudomonas sp. 31-12

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag DJ564_RS01825 Protein ID WP_109627206.1
Coordinates 400221..400502 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag DJ564_RS01820 Protein ID WP_109627204.1
Coordinates 399986..400231 (+) Length 82 a.a.

Genomic Context

DJ564_RS01810DJ564_RS01815DJ564_RS01820DJ564_RS01825DJ564_RS01835DJ564_RS01840DJ564_RS01845DJ564_RS01850DJ564_RS01795DJ564_RS01800DJ564_RS01805DJ564_RS01830
Location: 398996..399457 (462 bp)
Type: Others
Protein ID: WP_109627200.1
Location: 399595..399840 (246 bp)
Type: Others
Protein ID: WP_109627202.1
Location: 399986..400231 (246 bp)
Type: Antitoxin
Protein ID: WP_109627204.1
Location: 400221..400502 (282 bp)
Type: Toxin
Protein ID: WP_109627206.1
Location: 400894..401322 (429 bp)
Type: Others
Protein ID: WP_109627210.1
Location: 401319..403391 (2073 bp)
Type: Others
Protein ID: WP_109627212.1
Location: 403388..403597 (210 bp)
Type: Others
Protein ID: WP_008148151.1
Location: 403594..404481 (888 bp)
Type: Others
Protein ID: WP_109627214.1
Location: 396796..397179 (384 bp)
Type: Others
Protein ID: WP_109627197.1
Location: 397506..398264 (759 bp)
Type: Others
Protein ID: WP_109627199.1
Location: 398267..398797 (531 bp)
Type: Others
Protein ID: WP_109635916.1
Location: 400519..400701 (183 bp)
Type: Others
Protein ID: WP_109627208.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
DJ564_RS01795396796..397179-384WP_109627197.1hypothetical protein-
DJ564_RS01800397506..398264-759WP_109627199.1slipin family protein-
DJ564_RS01805398267..398797-531WP_109635916.1serine protease-
DJ564_RS01810398996..399457+462WP_109627200.1YbaK/EbsC family protein-
DJ564_RS01815399595..399840+246WP_109627202.1DUF2789 domain-containing protein-
DJ564_RS01820399986..400231+246WP_109627204.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
DJ564_RS01825400221..400502+282WP_109627206.1type II toxin-antitoxin system RelE/ParE family toxinToxin
DJ564_RS01830400519..400701-183WP_109627208.1hypothetical protein-
DJ564_RS01835400894..401322+429WP_109627210.1winged helix DNA-binding protein-
DJ564_RS01840401319..403391+2073WP_109627212.1FUSC family protein-
DJ564_RS01845403388..403597+210WP_008148151.1DUF1656 domain-containing protein-
DJ564_RS01850403594..404481+888WP_109627214.1HlyD family secretion protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-82)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(9-69)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10950.82 Da        Isoelectric Point: 10.5783

>T105709 WP_109627206.1 NZ_CP029482:400221-400502 [Pseudomonas sp. 31-12]
MTYKLEFLPSARKEWDKLGHTLREQFKKKLAERLQLPRVPSDSLHGMPDCYKIKLRSSGYRLVYEVIDERVVVSVVAVGK
RERSAVYDRAKKR

Download         Length: 282 bp

>T105709 NZ_CP029482:400221-400502 [Pseudomonas sp. 31-12]
ATGACCTATAAGCTCGAATTCCTGCCGTCCGCACGCAAGGAGTGGGACAAACTGGGTCATACATTGCGAGAGCAATTCAA
AAAGAAATTGGCAGAGCGACTTCAGCTCCCGCGAGTACCGTCAGACTCACTACATGGAATGCCTGACTGCTACAAAATCA
AGTTGCGCTCATCGGGGTACAGATTGGTGTACGAAGTTATTGATGAACGTGTAGTCGTTTCCGTGGTGGCAGTGGGTAAG
CGTGAACGCAGCGCTGTTTACGACCGAGCCAAGAAACGTTAA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8909.26 Da        Isoelectric Point: 4.7123

>AT105709 WP_109627204.1 NZ_CP029482:399986-400231 [Pseudomonas sp. 31-12]
MQNVLADIAVSVSELKKNPSAVLNGAHGGPVAVLNHNRVMGYMVPADVFECMMERLDDLELAEIVRSRRHETPVPVNLDD
L

Download         Length: 246 bp

>AT105709 NZ_CP029482:399986-400231 [Pseudomonas sp. 31-12]
ATGCAAAATGTTCTGGCCGACATCGCTGTCAGCGTGTCTGAGTTGAAGAAAAATCCATCAGCGGTACTGAACGGCGCTCA
TGGCGGGCCTGTGGCAGTGCTAAATCACAATCGCGTCATGGGCTACATGGTTCCGGCCGATGTTTTCGAGTGCATGATGG
AGCGACTCGATGATCTGGAACTGGCGGAAATTGTCCGCTCTCGCAGGCATGAGACACCGGTGCCGGTAAATCTGGATGAC
CTATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References