Detailed information of TA system TA105690

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): mazEF/MazF(toxin)
• Location: 558473..559110
• Replicon: chromosome
• Accession: NZ_CP029466
• Organism: Bacillus amyloliquefaciens strain HM618

Toxin (Protein)

• Gene name: mazF
• Uniprot ID: G4NU33
• Locus tag: DKG78_RS02895
• Protein ID: WP_003156187.1
• Coordinates: 558760..559110 (+)
• Length: 117 a.a.

Antitoxin (Protein)

• Gene name: mazE
• Uniprot ID: I2HMS5
• Locus tag: DKG78_RS02890
• Protein ID: WP_003156188.1
• Coordinates: 558473..558754 (+)
• Length: 94 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
DKG78_RS02870	554838..555437	-	600	WP_003156193.1	rhomboid family intramembrane serine protease	-
DKG78_RS02875	555530..555895	+	366	WP_007410229.1	holo-ACP synthase	-
DKG78_RS02880	556060..557067	+	1008	WP_007410230.1	outer membrane lipoprotein carrier protein LolA	-
DKG78_RS02885	557184..558353	+	1170	WP_025284272.1	alanine racemase	-
DKG78_RS02890	558473..558754	+	282	WP_003156188.1	type II toxin-antitoxin system antitoxin EndoAI	Antitoxin
DKG78_RS02895	558760..559110	+	351	WP_003156187.1	type II toxin-antitoxin system endoribonuclease NdoA	Toxin
DKG78_RS02900	559228..560049	+	822	WP_003156182.1	STAS domain-containing protein	-
DKG78_RS02905	560054..560419	+	366	WP_003156180.1	RsbT antagonist protein RsbS	-
DKG78_RS02910	560422..560823	+	402	WP_003156178.1	anti-sigma regulatory factor	-
DKG78_RS02915	560835..561842	+	1008	WP_007410233.1	PP2C family protein-serine/threonine phosphatase	-
DKG78_RS02920	561906..562235	+	330	WP_003156176.1	anti-sigma factor antagonist RsbV	-
DKG78_RS02925	562232..562714	+	483	WP_007609591.1	anti-sigma B factor RsbW	-
DKG78_RS02930	562680..563468	+	789	WP_003156171.1	RNA polymerase sigma factor SigB	-
DKG78_RS02935	563468..564070	+	603	WP_007410234.1	SpoIIE family protein phosphatase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• mRNA interferase PemK-like (4-111)

Antitoxin

• Ribbon-helix-helix protein, CopG (12-45)

Sequences

Toxin

Protein

• Length: 117 a.a.
• Molecular weight: 12977.98 Da
• Isoelectric Point: 4.8781

>T105690 WP_003156187.1 NZ_CP029466:558760-559110 [Bacillus amyloliquefaciens]
MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQI
RTIDKQRLTDKITHLDDEMMDKVDEALQISLALIDF

Nucleotide

• Length: 351 bp

>T105690 NZ_CP029466:558760-559110 [Bacillus amyloliquefaciens]
TTGATTGTAAAGCGCGGCGATGTTTATTTTGCTGATTTATCTCCTGTTGTTGGCTCAGAGCAAGGCGGCGTACGCCCGGT
TTTAGTGATCCAAAATGATATCGGAAATCGCTTTAGCCCGACTGCTATTGTTGCAGCCATAACAGCCCAAATACAGAAAG
CGAAATTACCAACCCACGTCGAAATTGATGCAAAACGCTACGGTTTTGAAAGAGATTCCGTTATTTTGCTGGAGCAAATT
CGGACGATTGATAAGCAAAGATTAACGGATAAAATAACTCATCTGGATGATGAAATGATGGATAAGGTTGATGAAGCCCT
GCAAATCAGTTTGGCACTCATTGATTTTTAG

Antitoxin

Protein

• Length: 94 a.a.
• Molecular weight: 10562.92 Da
• Isoelectric Point: 6.4706

>AT105690 WP_003156188.1 NZ_CP029466:558473-558754 [Bacillus amyloliquefaciens]
MSESSARTEMKISLPENLVAELDGVAMREKRSRNELISQAVRAYVSERTTRHNRDLMRRGYMEMAKINLNISSEAHYAEC
EAETTVERLVSGG

Nucleotide

• Length: 282 bp

>AT105690 NZ_CP029466:558473-558754 [Bacillus amyloliquefaciens]
TTGTCTGAATCCAGCGCAAGAACCGAAATGAAAATCAGCTTGCCTGAAAACTTAGTAGCTGAATTGGATGGTGTAGCGAT
GCGGGAGAAACGAAGCAGAAACGAACTGATATCACAAGCAGTGAGAGCGTATGTCAGCGAACGGACAACTCGCCATAACC
GTGATTTGATGAGACGCGGGTATATGGAAATGGCGAAAATCAACTTGAATATCTCTTCTGAGGCTCACTATGCTGAGTGC
GAAGCAGAAACGACCGTTGAGCGCTTAGTCAGCGGAGGATAA

Structures

Toxin

• PDB: 4MDX
• PDB: 4ME7
• PDB: 1NE8

Antitoxin

• AlphaFold DB: I2HMS5