Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-yefM/YoeB-YefM
Location 3674640..3675178 Replicon chromosome
Accession NZ_CP029427
Organism Bradyrhizobium symbiodeficiens strain 85S1MB

Toxin (Protein)


Gene name relB Uniprot ID -
Locus tag CIT39_RS17175 Protein ID WP_094977521.1
Coordinates 3674640..3674906 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag CIT39_RS17180 Protein ID WP_094977520.1
Coordinates 3674912..3675178 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CIT39_RS17155 3671860..3672300 + 441 WP_094977524.1 DUF983 domain-containing protein -
CIT39_RS17160 3672331..3673080 + 750 WP_094977523.1 NUDIX domain-containing protein -
CIT39_RS17170 3673308..3674636 + 1329 WP_094977522.1 LLM class flavin-dependent oxidoreductase -
CIT39_RS17175 3674640..3674906 - 267 WP_094977521.1 Txe/YoeB family addiction module toxin Toxin
CIT39_RS17180 3674912..3675178 - 267 WP_094977520.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
CIT39_RS17185 3675417..3675584 + 168 WP_008139339.1 50S ribosomal protein L33 -
CIT39_RS17190 3675998..3676684 + 687 WP_094977519.1 hypothetical protein -
CIT39_RS17195 3676727..3677179 + 453 WP_094977518.1 hypothetical protein -
CIT39_RS17200 3677352..3678590 + 1239 WP_094977517.1 acyltransferase -
CIT39_RS33745 3678826..3678987 - 162 WP_155526029.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10662.24 Da        Isoelectric Point: 8.9066

>T105650 WP_094977521.1 NZ_CP029427:c3674906-3674640 [Bradyrhizobium symbiodeficiens]
MLIAWTEIAWQDYLRWQQEDEKILSAINDLIKDIKRDPFKGIGKPEPLKHDLRGWWSRRITGEHRLVYRLQGKDDAQQLV
IAQCRYHY

Download         Length: 267 bp

>T105650 NZ_CP029427:c3674906-3674640 [Bradyrhizobium symbiodeficiens]
ATGCTGATCGCCTGGACCGAGATCGCCTGGCAAGACTACCTGCGATGGCAGCAAGAGGACGAAAAAATCCTCTCGGCCAT
CAACGATCTGATCAAGGACATTAAGAGAGATCCGTTCAAGGGGATCGGAAAGCCGGAGCCCCTCAAACATGATCTGCGCG
GCTGGTGGTCTCGCCGCATCACGGGCGAACACCGGCTGGTGTATCGCCTTCAAGGCAAGGATGACGCGCAACAACTCGTC
ATTGCCCAATGTCGATACCACTACTGA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9664.97 Da        Isoelectric Point: 4.8254

>AT105650 WP_094977520.1 NZ_CP029427:c3675178-3674912 [Bradyrhizobium symbiodeficiens]
MAHVSYTELRGNLAAYMDQVCDDRAPLVVTRQNARSVVMLSEEEYEGLVETVHLLKSPANAARLLRSIKEADEGKLVAHE
LIEPGSTG

Download         Length: 267 bp

>AT105650 NZ_CP029427:c3675178-3674912 [Bradyrhizobium symbiodeficiens]
ATGGCGCACGTTTCGTACACGGAGCTGCGGGGAAATCTTGCGGCCTACATGGATCAGGTCTGCGACGATCGCGCGCCTCT
CGTTGTGACGCGCCAGAACGCCCGCAGCGTGGTGATGCTCTCGGAGGAAGAGTATGAGGGTCTTGTGGAGACGGTCCATC
TTCTGAAGAGCCCGGCCAATGCCGCACGCCTTCTGCGCTCCATCAAGGAGGCCGACGAAGGCAAACTCGTCGCGCATGAA
TTGATCGAGCCCGGCTCGACCGGCTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References