Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 936330..936598 | Replicon | chromosome |
| Accession | NZ_CP029420 | ||
| Organism | Escherichia coli strain 3385 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 936368..936470 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 936330..936598 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DFS94_RS04835 | 933488..934927 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DFS94_RS04840 | 935044..935280 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DFS94_RS04845 | 935385..935576 | + | 192 | WP_001296140.1 | YebW family protein | - |
| DFS94_RS04850 | 935577..936233 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 936330..936598 | + | 269 | - | - | Antitoxin |
| - | 936368..936470 | - | 103 | - | - | Toxin |
| DFS94_RS04855 | 936628..936969 | - | 342 | WP_000976472.1 | YebY family protein | - |
| DFS94_RS04860 | 936982..937854 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| DFS94_RS04865 | 937858..938232 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DFS94_RS04870 | 938371..938601 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DFS94_RS04875 | 938703..939359 | + | 657 | WP_138976270.1 | carbon-nitrogen hydrolase family protein | - |
| DFS94_RS04880 | 939383..940045 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T105609 NZ_CP029420:c936470-936368 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT105609 NZ_CP029420:936330-936598 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
