Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 4910024..4910540 Replicon chromosome
Accession NZ_CP029384
Organism Klebsiella pneumoniae subsp. pneumoniae strain SCKP020079

Toxin (Protein)


Gene name relE Uniprot ID J2XDK6
Locus tag CLQ72_RS27895 Protein ID WP_002886902.1
Coordinates 4910024..4910308 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID R4Y888
Locus tag CLQ72_RS27900 Protein ID WP_002886901.1
Coordinates 4910298..4910540 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CLQ72_RS27875 4905508..4905816 - 309 WP_002886907.1 PTS sugar transporter subunit IIB -
CLQ72_RS27880 4906077..4906820 + 744 WP_002886905.1 MurR/RpiR family transcriptional regulator -
CLQ72_RS27885 4907177..4909315 + 2139 WP_002886904.1 anaerobic ribonucleoside-triphosphate reductase -
CLQ72_RS27890 4909556..4910020 + 465 WP_002886903.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
CLQ72_RS27895 4910024..4910308 - 285 WP_002886902.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CLQ72_RS27900 4910298..4910540 - 243 WP_002886901.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
CLQ72_RS27905 4910618..4912528 - 1911 WP_004152270.1 BglG family transcription antiterminator -
CLQ72_RS27910 4912551..4913705 - 1155 WP_002886900.1 lactonase family protein -
CLQ72_RS27915 4913771..4914511 - 741 WP_002886899.1 KDGP aldolase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-82)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-80)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11125.95 Da        Isoelectric Point: 10.3787

>T105571 WP_002886902.1 NZ_CP029384:c4910308-4910024 [Klebsiella pneumoniae subsp. pneumoniae]
MTYELEFDPRAWREWQKPGETVKKQFKNKLQQIVQNPRIESARLSDLPDCYKIKLKASGYRLVYQVRDSVVVVYVIAIGK
REKAAVYHQANKRL

Download         Length: 285 bp

>T105571 NZ_CP029384:c4910308-4910024 [Klebsiella pneumoniae subsp. pneumoniae]
ATGACCTATGAACTGGAGTTTGATCCACGAGCCTGGCGCGAATGGCAGAAGCCTGGCGAGACGGTCAAAAAACAGTTCAA
AAATAAGCTCCAGCAGATTGTGCAGAATCCGCGAATTGAGTCGGCCAGGCTGAGCGATTTACCGGATTGCTACAAAATCA
AGCTTAAGGCGTCAGGTTATCGGTTGGTGTATCAAGTACGAGATAGTGTGGTGGTGGTTTACGTTATTGCCATTGGCAAA
AGAGAGAAAGCGGCCGTTTATCATCAGGCGAATAAACGGCTCTAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9045.55 Da        Isoelectric Point: 6.3340

>AT105571 WP_002886901.1 NZ_CP029384:c4910540-4910298 [Klebsiella pneumoniae subsp. pneumoniae]
MATLNVRLDDKLKKEAYAVLEKLDMTPTEAVRLLFQYIAENGRMPVKSMTISDGEAALLRTVRERLENPRPGVKVSLDDL

Download         Length: 243 bp

>AT105571 NZ_CP029384:c4910540-4910298 [Klebsiella pneumoniae subsp. pneumoniae]
ATGGCCACGCTCAATGTTCGACTGGACGATAAACTCAAAAAAGAGGCTTATGCCGTGCTGGAGAAACTCGATATGACACC
AACGGAGGCGGTACGCCTGCTGTTTCAATACATTGCGGAAAATGGCCGCATGCCGGTGAAAAGTATGACCATCAGTGATG
GCGAAGCGGCGTTATTACGCACCGTTCGCGAACGGCTGGAAAACCCACGGCCGGGGGTTAAGGTGAGTCTGGATGACCTA
TGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GMH2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GLP0

References