Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2002082..2002353 | Replicon | chromosome |
| Accession | NZ_CP029369 | ||
| Organism | Escherichia coli strain WCHEC035148 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2002212..2002315 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2002082..2002353 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DI496_RS11940 | 1998637..1999299 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DI496_RS11945 | 1999323..1999979 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DI496_RS11950 | 2000081..2000311 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DI496_RS11955 | 2000450..2000824 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| DI496_RS11960 | 2000828..2001700 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| DI496_RS11965 | 2001713..2002054 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2002082..2002353 | - | 272 | - | - | Antitoxin |
| - | 2002212..2002315 | + | 104 | - | - | Toxin |
| DI496_RS11970 | 2002450..2003106 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| DI496_RS11975 | 2003107..2003298 | - | 192 | WP_001296140.1 | YebW family protein | - |
| DI496_RS11980 | 2003403..2003639 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DI496_RS11985 | 2003757..2005196 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1948551..2018191 | 69640 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T105513 NZ_CP029369:2002212-2002315 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT105513 NZ_CP029369:c2002353-2002082 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
