Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 4181852..4182636 | Replicon | chromosome |
| Accession | NZ_CP029328 | ||
| Organism | Escherichia coli strain A1 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | C7BUQ8 |
| Locus tag | AOY52_RS20350 | Protein ID | WP_000854717.1 |
| Coordinates | 4182310..4182636 (+) | Length | 109 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | C7BUQ9 |
| Locus tag | AOY52_RS20345 | Protein ID | WP_001285644.1 |
| Coordinates | 4181852..4182220 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY52_RS20305 (4177014) | 4177014..4177795 | + | 782 | Protein_3969 | IS3 family transposase | - |
| AOY52_RS20315 (4179103) | 4179103..4179540 | + | 438 | Protein_3971 | integrase core domain-containing protein | - |
| AOY52_RS20320 (4179550) | 4179550..4180101 | + | 552 | Protein_3972 | DUF932 domain-containing protein | - |
| AOY52_RS20325 (4180101) | 4180101..4180346 | + | 246 | WP_001164975.1 | hypothetical protein | - |
| AOY52_RS20330 (4180440) | 4180440..4180913 | + | 474 | WP_053879022.1 | antirestriction protein | - |
| AOY52_RS20335 (4180929) | 4180929..4181405 | + | 477 | WP_001368782.1 | RadC family protein | - |
| AOY52_RS20340 (4181468) | 4181468..4181689 | + | 222 | WP_000692319.1 | DUF987 domain-containing protein | - |
| AOY52_RS20345 (4181852) | 4181852..4182220 | + | 369 | WP_001285644.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| AOY52_RS20350 (4182310) | 4182310..4182636 | + | 327 | WP_000854717.1 | TA system toxin CbtA family protein | Toxin |
| AOY52_RS20355 (4182684) | 4182684..4183172 | + | 489 | WP_000761729.1 | DUF5983 family protein | - |
| AOY52_RS20360 (4183184) | 4183184..4183381 | + | 198 | WP_000839243.1 | DUF957 domain-containing protein | - |
| AOY52_RS20365 (4183466) | 4183466..4184308 | + | 843 | WP_001378387.1 | DUF4942 domain-containing protein | - |
| AOY52_RS20370 (4184651) | 4184651..4185187 | - | 537 | WP_000942795.1 | GspM family type II secretion system protein YghD | - |
| AOY52_RS20375 (4185189) | 4185189..4186367 | - | 1179 | WP_000094962.1 | type II secretion system protein GspL | - |
| AOY52_RS20380 (4186364) | 4186364..4187341 | - | 978 | WP_000633238.1 | type II secretion system minor pseudopilin GspK | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 109 a.a. Molecular weight: 12194.91 Da Isoelectric Point: 6.4697
>T105458 WP_000854717.1 NZ_CP029328:4182310-4182636 [Escherichia coli]
MKTLPDTHVREASRCPSPVIIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQSGF
SACTHSQLINSIDILRARRATGLMTRDN
MKTLPDTHVREASRCPSPVIIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQSGF
SACTHSQLINSIDILRARRATGLMTRDN
Download Length: 327 bp
>T105458 NZ_CP029328:4182310-4182636 [Escherichia coli]
ATGAAAACATTACCCGATACACACGTACGGGAGGCATCGCGCTGCCCGTCTCCCGTCATCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTACGGCCTCACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGACGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTACGTACCGACCAGTCGGGATTC
AGCGCCTGTACCCACTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCCGGGCAACAGGCCTGATGACTCGCGA
CAATTAA
ATGAAAACATTACCCGATACACACGTACGGGAGGCATCGCGCTGCCCGTCTCCCGTCATCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTACGGCCTCACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGACGCGGTGAACTTTCTCGTTGAAAAATACGCGCTGGTACGTACCGACCAGTCGGGATTC
AGCGCCTGTACCCACTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCCGGGCAACAGGCCTGATGACTCGCGA
CAATTAA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13533.31 Da Isoelectric Point: 5.0235
>AT105458 WP_001285644.1 NZ_CP029328:4181852-4182220 [Escherichia coli]
VSDTLSGTTHPDDNHDHPWWGLPCTVTPCFGVCLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELSPRYQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPEMKN
VSDTLSGTTHPDDNHDHPWWGLPCTVTPCFGVCLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELSPRYQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPEMKN
Download Length: 369 bp
>AT105458 NZ_CP029328:4181852-4182220 [Escherichia coli]
GTGTCAGACACACTCTCCGGGACAACGCATCCCGATGACAATCACGACCATCCCTGGTGGGGACTACCCTGCACAGTGAC
GCCCTGTTTCGGCGTCTGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAGCTCATGCTCACCAGTGGT
GAACTCAGCCCCCGCTATCAGCATACCGTCACGCTGTATGCGAAAGGACTGACCTGCGAAGCCGATACCCTGGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA
GTGTCAGACACACTCTCCGGGACAACGCATCCCGATGACAATCACGACCATCCCTGGTGGGGACTACCCTGCACAGTGAC
GCCCTGTTTCGGCGTCTGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAGCTCATGCTCACCAGTGGT
GAACTCAGCCCCCGCTATCAGCATACCGTCACGCTGTATGCGAAAGGACTGACCTGCGAAGCCGATACCCTGGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|