Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2703064..2703332 | Replicon | chromosome |
| Accession | NZ_CP029327 | ||
| Organism | Escherichia coli strain A37 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2703102..2703204 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2703064..2703332 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY90_RS13045 | 2700220..2701659 | + | 1440 | WP_097751867.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY90_RS13050 | 2701778..2702014 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AOY90_RS13055 | 2702119..2702310 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AOY90_RS13060 | 2702311..2702967 | - | 657 | WP_240728585.1 | protein-serine/threonine phosphatase | - |
| - | 2703064..2703332 | + | 269 | - | - | Antitoxin |
| - | 2703102..2703204 | - | 103 | - | - | Toxin |
| AOY90_RS13065 | 2703362..2703703 | - | 342 | WP_000984819.1 | YebY family protein | - |
| AOY90_RS13070 | 2703716..2704588 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| AOY90_RS13075 | 2704592..2704966 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY90_RS13080 | 2705105..2705335 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY90_RS13085 | 2705437..2706093 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY90_RS13090 | 2706117..2706779 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T105420 NZ_CP029327:c2703204-2703102 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT105420 NZ_CP029327:2703064-2703332 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
