Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 65331..65875 Replicon chromosome
Accession NZ_CP029275
Organism Xanthomonas citri strain M11

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag DGM98_RS00275 Protein ID WP_005912562.1
Coordinates 65597..65875 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag DGM98_RS00270 Protein ID WP_099802649.1
Coordinates 65331..65588 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DGM98_RS00255 (DGM98_00280) 60457..61932 - 1476 WP_099802648.1 ribonuclease H-like domain-containing protein -
DGM98_RS00260 (DGM98_00285) 61929..64424 - 2496 WP_162808326.1 DEAD/DEAH box helicase -
DGM98_RS00265 (DGM98_00290) 64602..65264 + 663 WP_162808327.1 hemolysin III family protein -
DGM98_RS00270 (DGM98_00295) 65331..65588 + 258 WP_099802649.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
DGM98_RS00275 (DGM98_00300) 65597..65875 + 279 WP_005912562.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
DGM98_RS00285 (DGM98_00310) 66055..66954 - 900 WP_007973076.1 SDR family NAD(P)-dependent oxidoreductase -
DGM98_RS00290 (DGM98_00315) 67014..67751 - 738 WP_099802650.1 SDR family oxidoreductase -
DGM98_RS00295 (DGM98_00320) 67877..68788 + 912 WP_099802651.1 LysR family transcriptional regulator -
DGM98_RS00300 (DGM98_00325) 68989..69699 + 711 WP_099802652.1 hypothetical protein -
DGM98_RS00305 (DGM98_00330) 69925..70401 + 477 WP_099802653.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10415.00 Da        Isoelectric Point: 10.1557

>T105382 WP_005912562.1 NZ_CP029275:65597-65875 [Xanthomonas citri]
VPALADLDAIADYIAIDNAPAAAALVKRVFAHVEQLIEHPDSGSRPQELKRSRYRQIVEPPCRVFYRVDGQRIVVVHVMR
SERALRGNRLSR

Download         Length: 279 bp

>T105382 NZ_CP029275:65597-65875 [Xanthomonas citri]
GTGCCGGCATTGGCTGATCTGGACGCAATCGCCGACTACATCGCAATCGATAACGCACCCGCTGCAGCGGCGCTGGTGAA
ACGGGTGTTCGCGCACGTTGAGCAATTGATTGAACACCCGGACAGCGGAAGCCGGCCACAGGAACTCAAGCGCTCGCGCT
ATCGCCAGATTGTCGAACCACCTTGCCGCGTGTTCTACCGCGTGGATGGGCAGCGCATCGTGGTGGTGCACGTAATGCGG
TCGGAGCGCGCGCTTCGCGGGAACCGTCTTTCACGCTGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9618.09 Da        Isoelectric Point: 8.6223

>AT105382 WP_099802649.1 NZ_CP029275:65331-65588 [Xanthomonas citri]
MRTELVTTLKRQATELLAAAERDKEPILITQHGLPSAYLVDVASYERMQQRIALLEGIARGEMGVADGRTLSHEQAQQRM
ARWLK

Download         Length: 258 bp

>AT105382 NZ_CP029275:65331-65588 [Xanthomonas citri]
ATGCGCACCGAACTTGTCACCACGCTCAAGCGTCAGGCGACCGAACTCCTTGCAGCTGCAGAGCGCGACAAGGAGCCAAT
CCTGATCACACAGCACGGTTTACCCAGTGCCTATCTGGTGGATGTTGCCAGCTATGAGCGCATGCAGCAGCGCATTGCGC
TCCTCGAAGGAATCGCCCGGGGAGAAATGGGAGTCGCGGACGGCCGTACGCTGAGCCATGAACAGGCACAGCAACGCATG
GCGCGATGGCTGAAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References