Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/YafQ-RelB |
| Location | 5132714..5133251 | Replicon | chromosome |
| Accession | NZ_CP029270 | ||
| Organism | Xanthomonas citri pv. fuscans strain FH61 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A7X9YU06 |
| Locus tag | DGN07_RS22075 | Protein ID | WP_017158383.1 |
| Coordinates | 5132970..5133251 (+) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A7X9UWY6 |
| Locus tag | DGN07_RS22070 | Protein ID | WP_017158384.1 |
| Coordinates | 5132714..5132983 (+) | Length | 90 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DGN07_RS22040 (DGN07_22940) | 5127991..5128599 | + | 609 | WP_017154888.1 | hypothetical protein | - |
| DGN07_RS22045 (DGN07_22945) | 5128712..5129344 | + | 633 | WP_007966093.1 | ParA family protein | - |
| DGN07_RS22050 (DGN07_22950) | 5129337..5129669 | + | 333 | WP_007966095.1 | hypothetical protein | - |
| DGN07_RS22055 (DGN07_22955) | 5129736..5130020 | + | 285 | WP_017154887.1 | hypothetical protein | - |
| DGN07_RS22060 (DGN07_22960) | 5130027..5131199 | + | 1173 | WP_040965719.1 | zeta toxin family protein | - |
| DGN07_RS22065 (DGN07_22965) | 5131643..5132605 | + | 963 | WP_022560476.1 | recombinase family protein | - |
| DGN07_RS22070 (DGN07_22970) | 5132714..5132983 | + | 270 | WP_017158384.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| DGN07_RS22075 (DGN07_22975) | 5132970..5133251 | + | 282 | WP_017158383.1 | type II toxin-antitoxin system YafQ family toxin | Toxin |
| DGN07_RS22080 (DGN07_22980) | 5133389..5133742 | - | 354 | WP_033481414.1 | hypothetical protein | - |
| DGN07_RS22085 (DGN07_22985) | 5133788..5134495 | - | 708 | WP_022560478.1 | StbB family protein | - |
| DGN07_RS22090 (DGN07_22990) | 5134492..5134938 | - | 447 | WP_033481413.1 | hypothetical protein | - |
| DGN07_RS22095 (DGN07_22995) | 5135284..5135679 | + | 396 | WP_022560480.1 | hypothetical protein | - |
| DGN07_RS22100 (DGN07_23000) | 5135777..5136046 | + | 270 | WP_033481412.1 | hypothetical protein | - |
| DGN07_RS22105 (DGN07_23005) | 5136043..5136336 | + | 294 | WP_046735719.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DGN07_RS22110 (DGN07_23010) | 5136449..5137069 | + | 621 | WP_011345593.1 | hypothetical protein | - |
| DGN07_RS22115 (DGN07_23015) | 5137268..5137609 | + | 342 | WP_029561219.1 | hypothetical protein | - |
| DGN07_RS22120 (DGN07_23020) | 5137681..5137878 | + | 198 | WP_022560481.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10679.06 Da Isoelectric Point: 8.9188
>T105377 WP_017158383.1 NZ_CP029270:5132970-5133251 [Xanthomonas citri pv. fuscans]
MRTIDRSSAFKRDYKREAKGQHRATLDDAIKPVLVALATDQPPDARYRDHDLSGDWAGYRECHIKPDLLLIYRKSDPDTL
RLARLGSHSELFG
MRTIDRSSAFKRDYKREAKGQHRATLDDAIKPVLVALATDQPPDARYRDHDLSGDWAGYRECHIKPDLLLIYRKSDPDTL
RLARLGSHSELFG
Download Length: 282 bp
>T105377 NZ_CP029270:5132970-5133251 [Xanthomonas citri pv. fuscans]
ATGCGGACGATTGACCGTTCATCCGCTTTCAAGCGCGACTACAAGCGGGAAGCCAAGGGGCAGCATCGCGCCACGCTTGA
TGACGCGATCAAGCCGGTGTTGGTCGCACTGGCGACCGATCAGCCTCCCGATGCACGCTATCGCGATCACGATCTTTCCG
GCGATTGGGCGGGCTATCGGGAATGTCACATCAAGCCTGACTTGCTGCTGATCTACCGCAAGTCCGACCCCGACACCCTG
CGACTGGCACGGCTTGGCTCGCACAGCGAGCTTTTCGGCTGA
ATGCGGACGATTGACCGTTCATCCGCTTTCAAGCGCGACTACAAGCGGGAAGCCAAGGGGCAGCATCGCGCCACGCTTGA
TGACGCGATCAAGCCGGTGTTGGTCGCACTGGCGACCGATCAGCCTCCCGATGCACGCTATCGCGATCACGATCTTTCCG
GCGATTGGGCGGGCTATCGGGAATGTCACATCAAGCCTGACTTGCTGCTGATCTACCGCAAGTCCGACCCCGACACCCTG
CGACTGGCACGGCTTGGCTCGCACAGCGAGCTTTTCGGCTGA
Antitoxin
Download Length: 90 a.a. Molecular weight: 9719.10 Da Isoelectric Point: 5.6976
>AT105377 WP_017158384.1 NZ_CP029270:5132714-5132983 [Xanthomonas citri pv. fuscans]
MSTTADTYVRARIDTATKERAASALEAMGLSISDAIRLLMLRIADEHRLPFDVKVPNTTTKKAIAELESGKGKKFANVDD
LMADLHADD
MSTTADTYVRARIDTATKERAASALEAMGLSISDAIRLLMLRIADEHRLPFDVKVPNTTTKKAIAELESGKGKKFANVDD
LMADLHADD
Download Length: 270 bp
>AT105377 NZ_CP029270:5132714-5132983 [Xanthomonas citri pv. fuscans]
ATGAGCACTACCGCCGATACCTACGTCCGCGCCCGCATCGACACCGCCACCAAGGAACGTGCCGCTAGTGCGCTCGAAGC
AATGGGGCTGTCGATCTCTGATGCTATCCGCCTGCTGATGCTACGCATTGCCGACGAACACCGCCTGCCCTTCGATGTGA
AGGTACCAAACACCACCACGAAAAAGGCGATTGCCGAACTGGAATCAGGCAAGGGTAAGAAGTTCGCCAATGTGGACGAC
CTGATGGCGGATTTGCATGCGGACGATTGA
ATGAGCACTACCGCCGATACCTACGTCCGCGCCCGCATCGACACCGCCACCAAGGAACGTGCCGCTAGTGCGCTCGAAGC
AATGGGGCTGTCGATCTCTGATGCTATCCGCCTGCTGATGCTACGCATTGCCGACGAACACCGCCTGCCCTTCGATGTGA
AGGTACCAAACACCACCACGAAAAAGGCGATTGCCGAACTGGAATCAGGCAAGGGTAAGAAGTTCGCCAATGTGGACGAC
CTGATGGCGGATTTGCATGCGGACGATTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7X9YU06 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7X9UWY6 |