Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/YafQ-RelB |
| Location | 5007474..5008011 | Replicon | chromosome |
| Accession | NZ_CP029267 | ||
| Organism | Xanthomonas citri pv. fuscans strain M12 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A7X9YU06 |
| Locus tag | DGN11_RS21340 | Protein ID | WP_017158383.1 |
| Coordinates | 5007730..5008011 (+) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A7X9UWY6 |
| Locus tag | DGN11_RS21335 | Protein ID | WP_017158384.1 |
| Coordinates | 5007474..5007743 (+) | Length | 90 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DGN11_RS21305 (DGN11_22350) | 5002736..5003344 | + | 609 | WP_017154888.1 | hypothetical protein | - |
| DGN11_RS21310 (DGN11_22355) | 5003457..5004089 | + | 633 | WP_007966093.1 | ParA family protein | - |
| DGN11_RS21315 (DGN11_22360) | 5004082..5004414 | + | 333 | WP_007966095.1 | hypothetical protein | - |
| DGN11_RS21320 (DGN11_22365) | 5004481..5004765 | + | 285 | WP_017154887.1 | hypothetical protein | - |
| DGN11_RS21325 (DGN11_22370) | 5004772..5005959 | + | 1188 | WP_022560475.1 | zeta toxin family protein | - |
| DGN11_RS21330 (DGN11_22375) | 5006403..5007365 | + | 963 | WP_022560476.1 | recombinase family protein | - |
| DGN11_RS21335 (DGN11_22380) | 5007474..5007743 | + | 270 | WP_017158384.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| DGN11_RS21340 (DGN11_22385) | 5007730..5008011 | + | 282 | WP_017158383.1 | type II toxin-antitoxin system YafQ family toxin | Toxin |
| DGN11_RS21345 (DGN11_22390) | 5008149..5008502 | - | 354 | WP_033481414.1 | hypothetical protein | - |
| DGN11_RS21350 (DGN11_22395) | 5008548..5009255 | - | 708 | WP_022560478.1 | StbB family protein | - |
| DGN11_RS21355 (DGN11_22400) | 5009252..5009698 | - | 447 | WP_033481413.1 | hypothetical protein | - |
| DGN11_RS21360 (DGN11_22405) | 5010044..5010439 | + | 396 | WP_022560480.1 | hypothetical protein | - |
| DGN11_RS21365 (DGN11_22410) | 5010537..5010806 | + | 270 | WP_033481412.1 | hypothetical protein | - |
| DGN11_RS21370 (DGN11_22415) | 5010803..5011096 | + | 294 | WP_011345592.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DGN11_RS21375 (DGN11_22420) | 5011209..5011829 | + | 621 | WP_011345593.1 | hypothetical protein | - |
| DGN11_RS21380 (DGN11_22425) | 5012028..5012369 | + | 342 | WP_029561219.1 | hypothetical protein | - |
| DGN11_RS21385 (DGN11_22430) | 5012441..5012638 | + | 198 | WP_022560481.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 5002736..5021371 | 18635 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10679.06 Da Isoelectric Point: 8.9188
>T105373 WP_017158383.1 NZ_CP029267:5007730-5008011 [Xanthomonas citri pv. fuscans]
MRTIDRSSAFKRDYKREAKGQHRATLDDAIKPVLVALATDQPPDARYRDHDLSGDWAGYRECHIKPDLLLIYRKSDPDTL
RLARLGSHSELFG
MRTIDRSSAFKRDYKREAKGQHRATLDDAIKPVLVALATDQPPDARYRDHDLSGDWAGYRECHIKPDLLLIYRKSDPDTL
RLARLGSHSELFG
Download Length: 282 bp
>T105373 NZ_CP029267:5007730-5008011 [Xanthomonas citri pv. fuscans]
ATGCGGACGATTGACCGTTCATCCGCTTTCAAGCGCGACTACAAGCGGGAAGCCAAGGGGCAGCATCGCGCCACGCTTGA
TGACGCGATCAAGCCGGTGTTGGTCGCACTGGCGACCGATCAGCCTCCCGATGCACGCTATCGCGATCACGATCTTTCCG
GCGATTGGGCGGGCTATCGGGAATGTCACATCAAGCCTGACTTGCTGCTGATCTACCGCAAGTCCGACCCCGACACCCTG
CGACTGGCACGGCTTGGCTCGCACAGCGAGCTTTTCGGCTGA
ATGCGGACGATTGACCGTTCATCCGCTTTCAAGCGCGACTACAAGCGGGAAGCCAAGGGGCAGCATCGCGCCACGCTTGA
TGACGCGATCAAGCCGGTGTTGGTCGCACTGGCGACCGATCAGCCTCCCGATGCACGCTATCGCGATCACGATCTTTCCG
GCGATTGGGCGGGCTATCGGGAATGTCACATCAAGCCTGACTTGCTGCTGATCTACCGCAAGTCCGACCCCGACACCCTG
CGACTGGCACGGCTTGGCTCGCACAGCGAGCTTTTCGGCTGA
Antitoxin
Download Length: 90 a.a. Molecular weight: 9719.10 Da Isoelectric Point: 5.6976
>AT105373 WP_017158384.1 NZ_CP029267:5007474-5007743 [Xanthomonas citri pv. fuscans]
MSTTADTYVRARIDTATKERAASALEAMGLSISDAIRLLMLRIADEHRLPFDVKVPNTTTKKAIAELESGKGKKFANVDD
LMADLHADD
MSTTADTYVRARIDTATKERAASALEAMGLSISDAIRLLMLRIADEHRLPFDVKVPNTTTKKAIAELESGKGKKFANVDD
LMADLHADD
Download Length: 270 bp
>AT105373 NZ_CP029267:5007474-5007743 [Xanthomonas citri pv. fuscans]
ATGAGCACTACCGCCGATACCTACGTCCGCGCCCGCATCGACACCGCCACCAAGGAACGTGCCGCTAGTGCGCTCGAAGC
AATGGGGCTGTCGATCTCTGATGCTATCCGCCTGCTGATGCTACGCATTGCCGACGAACACCGCCTGCCCTTCGATGTGA
AGGTACCAAACACCACCACGAAAAAGGCGATTGCCGAACTGGAATCAGGCAAGGGTAAGAAGTTCGCCAATGTGGACGAC
CTGATGGCGGATTTGCATGCGGACGATTGA
ATGAGCACTACCGCCGATACCTACGTCCGCGCCCGCATCGACACCGCCACCAAGGAACGTGCCGCTAGTGCGCTCGAAGC
AATGGGGCTGTCGATCTCTGATGCTATCCGCCTGCTGATGCTACGCATTGCCGACGAACACCGCCTGCCCTTCGATGTGA
AGGTACCAAACACCACCACGAAAAAGGCGATTGCCGAACTGGAATCAGGCAAGGGTAAGAAGTTCGCCAATGTGGACGAC
CTGATGGCGGATTTGCATGCGGACGATTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7X9YU06 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7X9UWY6 |