Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1871469..1871668 | Replicon | chromosome |
| Accession | NZ_CP029246 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain OSUVMCKPC4-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1871562..1871665 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1871469..1871668 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DF208_RS09380 | 1868006..1868668 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| DF208_RS09385 | 1868693..1869343 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| DF208_RS09390 | 1869455..1869685 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| DF208_RS09395 | 1869823..1870194 | + | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| DF208_RS09400 | 1870196..1871065 | + | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| DF208_RS09405 | 1871082..1871420 | + | 339 | WP_032609509.1 | YebY family protein | - |
| - | 1871469..1871668 | - | 200 | - | - | Antitoxin |
| DF208_RS09410 | 1871546..1871743 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 1871562..1871665 | + | 104 | - | - | Toxin |
| DF208_RS09415 | 1871789..1872769 | - | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| DF208_RS09420 | 1872937..1873581 | + | 645 | WP_023324865.1 | protein-serine/threonine phosphatase | - |
| DF208_RS09425 | 1873616..1873855 | - | 240 | WP_003859885.1 | YebV family protein | - |
| DF208_RS09430 | 1873962..1875425 | - | 1464 | WP_032609505.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T105347 NZ_CP029246:1871562-1871665 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT105347 NZ_CP029246:c1871668-1871469 [Enterobacter hormaechei subsp. xiangfangensis]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
