Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1972439..1972710 | Replicon | chromosome |
| Accession | NZ_CP029239 | ||
| Organism | Escherichia coli strain BH212 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1972477..1972580 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1972439..1972710 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DF195_RS09895 | 1969596..1971035 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DF195_RS09900 | 1971153..1971389 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DF195_RS09905 | 1971494..1971685 | + | 192 | WP_000457842.1 | YebW family protein | - |
| DF195_RS09910 | 1971686..1972342 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1972439..1972710 | + | 272 | - | - | Antitoxin |
| - | 1972477..1972580 | - | 104 | - | - | Toxin |
| DF195_RS09915 | 1972738..1973079 | - | 342 | WP_000976476.1 | YebY family protein | - |
| DF195_RS09920 | 1973092..1973964 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| DF195_RS09925 | 1973968..1974342 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DF195_RS09930 | 1974481..1974711 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DF195_RS09935 | 1974813..1975469 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DF195_RS09940 | 1975493..1976155 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T105288 NZ_CP029239:c1972580-1972477 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT105288 NZ_CP029239:1972439-1972710 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
