Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /RES-Xre |
| Location | 1270053..1270988 | Replicon | plasmid pSF45436b |
| Accession | NZ_CP029232 | ||
| Organism | Sinorhizobium fredii CCBAU 45436 | ||
Toxin (Protein)
| Gene name | - | Uniprot ID | A0A2U8GCG7 |
| Locus tag | AB395_RS26265 | Protein ID | WP_037452710.1 |
| Coordinates | 1270053..1270613 (-) | Length | 187 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | G9AHB7 |
| Locus tag | AB395_RS26270 | Protein ID | WP_014332101.1 |
| Coordinates | 1270617..1270988 (-) | Length | 124 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB395_RS26245 | 1265684..1266541 | + | 858 | WP_037452746.1 | sulfate ABC transporter permease subunit CysT | - |
| AB395_RS26250 | 1266531..1267406 | + | 876 | WP_037452744.1 | sulfate ABC transporter permease subunit CysW | - |
| AB395_RS26255 | 1267422..1268531 | + | 1110 | WP_109023415.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| AB395_RS26260 | 1268676..1270040 | + | 1365 | WP_037452713.1 | FAD-binding oxidoreductase | - |
| AB395_RS26265 | 1270053..1270613 | - | 561 | WP_037452710.1 | RES family NAD+ phosphorylase | Toxin |
| AB395_RS26270 | 1270617..1270988 | - | 372 | WP_014332101.1 | DUF2384 domain-containing protein | Antitoxin |
| AB395_RS26275 | 1271076..1271861 | - | 786 | WP_037452706.1 | crotonase/enoyl-CoA hydratase family protein | - |
| AB395_RS26280 | 1271858..1272727 | - | 870 | WP_037452703.1 | hydroxymethylglutaryl-CoA lyase | - |
| AB395_RS26285 | 1272724..1274712 | - | 1989 | WP_037452700.1 | acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha | - |
| AB395_RS26290 | 1274728..1275111 | - | 384 | WP_014332105.1 | RidA family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | pseB / katA | 1..1961287 | 1961287 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 187 a.a. Molecular weight: 20801.61 Da Isoelectric Point: 6.6454
>T105232 WP_037452710.1 NZ_CP029232:c1270613-1270053 [Sinorhizobium fredii CCBAU 45436]
MKKNITGPSASRSDMEVTTPAEPMTLWRAFVPRWAHMPLSGEGAARFGGRWNPVGTPTIYAARELSTAWAEYNQGFVQHP
ALIVQLELRDATLADLTDGDVLAELGLDEAIHRWEWRDELDKGLVPQTHKTHADLLKRGYDGVIYPSYMSPGGTCVALWR
WNGRGRPRLDVIDPEGRLPKSPASWL
MKKNITGPSASRSDMEVTTPAEPMTLWRAFVPRWAHMPLSGEGAARFGGRWNPVGTPTIYAARELSTAWAEYNQGFVQHP
ALIVQLELRDATLADLTDGDVLAELGLDEAIHRWEWRDELDKGLVPQTHKTHADLLKRGYDGVIYPSYMSPGGTCVALWR
WNGRGRPRLDVIDPEGRLPKSPASWL
Download Length: 561 bp
>T105232 NZ_CP029232:c1270613-1270053 [Sinorhizobium fredii CCBAU 45436]
ATGAAGAAAAATATAACCGGTCCGTCCGCCTCCCGCTCCGACATGGAAGTGACGACGCCGGCCGAGCCGATGACGCTCTG
GCGCGCTTTCGTGCCGCGCTGGGCCCATATGCCGCTTTCCGGCGAGGGCGCGGCCCGCTTCGGCGGTCGGTGGAATCCGG
TCGGTACGCCGACGATCTACGCCGCGCGTGAACTTTCCACCGCCTGGGCGGAATATAACCAGGGCTTCGTCCAGCACCCG
GCGCTGATCGTGCAACTCGAGCTTCGCGATGCGACGCTGGCCGATCTCACGGATGGCGATGTTCTCGCCGAGCTCGGACT
AGACGAGGCAATCCATCGCTGGGAGTGGCGCGACGAACTTGACAAGGGCTTGGTCCCGCAGACGCATAAGACCCACGCCG
ATCTTTTGAAGCGCGGCTACGACGGCGTGATCTACCCGTCCTACATGTCGCCCGGCGGCACCTGCGTCGCCCTCTGGCGC
TGGAATGGACGGGGCAGGCCGCGGCTCGATGTCATCGATCCGGAAGGTCGGCTGCCGAAATCGCCCGCATCGTGGCTTTA
G
ATGAAGAAAAATATAACCGGTCCGTCCGCCTCCCGCTCCGACATGGAAGTGACGACGCCGGCCGAGCCGATGACGCTCTG
GCGCGCTTTCGTGCCGCGCTGGGCCCATATGCCGCTTTCCGGCGAGGGCGCGGCCCGCTTCGGCGGTCGGTGGAATCCGG
TCGGTACGCCGACGATCTACGCCGCGCGTGAACTTTCCACCGCCTGGGCGGAATATAACCAGGGCTTCGTCCAGCACCCG
GCGCTGATCGTGCAACTCGAGCTTCGCGATGCGACGCTGGCCGATCTCACGGATGGCGATGTTCTCGCCGAGCTCGGACT
AGACGAGGCAATCCATCGCTGGGAGTGGCGCGACGAACTTGACAAGGGCTTGGTCCCGCAGACGCATAAGACCCACGCCG
ATCTTTTGAAGCGCGGCTACGACGGCGTGATCTACCCGTCCTACATGTCGCCCGGCGGCACCTGCGTCGCCCTCTGGCGC
TGGAATGGACGGGGCAGGCCGCGGCTCGATGTCATCGATCCGGAAGGTCGGCTGCCGAAATCGCCCGCATCGTGGCTTTA
G
Antitoxin
Download Length: 124 a.a. Molecular weight: 13167.29 Da Isoelectric Point: 9.5098
>AT105232 WP_014332101.1 NZ_CP029232:c1270988-1270617 [Sinorhizobium fredii CCBAU 45436]
MIAVDFQIPAARFGDDHSPFLSARLVADRLGVTLAELAKLIGVARNTLTAKSGARKVDSALSKVVRILAMASEMAGDEAR
AVIWFKHQPIPGWAGKTAYDLVGEDKADKVLAYLEAIRAGVYA
MIAVDFQIPAARFGDDHSPFLSARLVADRLGVTLAELAKLIGVARNTLTAKSGARKVDSALSKVVRILAMASEMAGDEAR
AVIWFKHQPIPGWAGKTAYDLVGEDKADKVLAYLEAIRAGVYA
Download Length: 372 bp
>AT105232 NZ_CP029232:c1270988-1270617 [Sinorhizobium fredii CCBAU 45436]
ATGATAGCTGTCGATTTCCAGATTCCGGCGGCGCGCTTCGGAGACGACCATTCTCCGTTCCTGTCGGCGCGCCTTGTCGC
CGATCGGCTGGGCGTCACGCTCGCCGAACTCGCCAAACTGATTGGCGTCGCGCGCAACACGCTGACGGCAAAGTCCGGCG
CGCGAAAGGTCGACAGCGCCTTGAGCAAGGTCGTTCGCATCCTCGCCATGGCGTCCGAAATGGCCGGCGACGAGGCGCGC
GCCGTCATCTGGTTCAAGCACCAGCCGATCCCCGGCTGGGCCGGCAAGACCGCATATGACCTGGTCGGCGAGGACAAGGC
CGACAAGGTTCTCGCCTATCTCGAGGCGATCCGCGCCGGCGTCTACGCCTAG
ATGATAGCTGTCGATTTCCAGATTCCGGCGGCGCGCTTCGGAGACGACCATTCTCCGTTCCTGTCGGCGCGCCTTGTCGC
CGATCGGCTGGGCGTCACGCTCGCCGAACTCGCCAAACTGATTGGCGTCGCGCGCAACACGCTGACGGCAAAGTCCGGCG
CGCGAAAGGTCGACAGCGCCTTGAGCAAGGTCGTTCGCATCCTCGCCATGGCGTCCGAAATGGCCGGCGACGAGGCGCGC
GCCGTCATCTGGTTCAAGCACCAGCCGATCCCCGGCTGGGCCGGCAAGACCGCATATGACCTGGTCGGCGAGGACAAGGC
CGACAAGGTTCTCGCCTATCTCGAGGCGATCCGCGCCGGCGTCTACGCCTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2U8GCG7 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | G9AHB7 |