105181

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 3590353..3592073 Replicon chromosome
Accession NZ_CP029185
Organism Limnobaculum parvum strain HYN0051

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag HYN51_RS15170 Protein ID WP_108900788.1
Coordinates 3591417..3592073 (-) Length 219 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag HYN51_RS15165 Protein ID WP_108900787.1
Coordinates 3590353..3591420 (-) Length 356 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HYN51_RS15150 3586244..3587329 + 1086 WP_108900784.1 ABC transporter substrate-binding protein -
HYN51_RS15155 3587403..3589172 + 1770 WP_108900785.1 iron ABC transporter permease -
HYN51_RS15160 3589165..3590238 + 1074 WP_108900786.1 ABC transporter ATP-binding protein -
HYN51_RS15165 3590353..3591420 - 1068 WP_108900787.1 macro domain-containing protein Antitoxin
HYN51_RS15170 3591417..3592073 - 657 WP_108900788.1 DUF4433 domain-containing protein Toxin
HYN51_RS15175 3592076..3592651 - 576 WP_108900789.1 DUF4433 domain-containing protein -
HYN51_RS15180 3592992..3593909 - 918 WP_108900790.1 formate dehydrogenase accessory protein FdhE -
HYN51_RS15185 3593906..3594544 - 639 WP_192878417.1 formate dehydrogenase-N subunit gamma -
HYN51_RS15190 3594531..3595424 - 894 WP_108900791.1 formate dehydrogenase subunit beta -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(17-217)

Antitoxin

Macro domain

(18-128)


Sequences

Toxin        


Download         Length: 219 a.a.        Molecular weight: 25341.78 Da        Isoelectric Point: 7.0109

>T105181 WP_108900788.1 NZ_CP029185:c3592073-3591417 [Limnobaculum parvum]
MAYDYSGSLNPEKALIWRIVHRDNIPWLLDNGLHCGHSSVHTDNWINIGNPELINKRSMHPVSAGVGGMLHDYVPFYFTP
FSPMLMNIHSGHGGIKQRPNEEVVILVSSLHHVAAQNVPFVFTDSHAYYHWANYYTDLADLHRIDWRILQTRDFRRDPED
PAKFERYQAEALVYKHIPVSLLGGMVCYNDDVKVQLEYWLSQRNLKMPVYARAGWYFS

Download         Length: 657 bp

>T105181 NZ_CP029185:c3592073-3591417 [Limnobaculum parvum]
ATGGCTTATGATTATAGTGGCAGTCTCAATCCAGAAAAAGCGTTGATTTGGCGTATTGTCCATCGAGATAATATACCATG
GCTATTGGATAACGGATTGCATTGTGGCCATAGTTCTGTACACACAGATAATTGGATTAATATTGGGAATCCAGAGTTGA
TCAACAAGCGGTCTATGCATCCAGTATCTGCTGGCGTGGGCGGGATGTTACATGATTATGTACCATTCTATTTTACTCCC
TTTTCTCCGATGCTGATGAATATCCATAGTGGACATGGGGGAATTAAGCAACGCCCTAATGAAGAGGTGGTAATTTTGGT
TAGCAGTTTACATCATGTGGCTGCACAAAATGTCCCGTTTGTGTTTACAGATAGCCATGCTTACTATCATTGGGCAAACT
ATTATACCGATCTGGCAGATTTGCACCGAATTGATTGGCGTATATTACAAACTCGGGATTTTCGACGAGACCCGGAAGAT
CCTGCCAAGTTTGAGAGATATCAGGCAGAGGCTTTGGTCTACAAGCATATTCCAGTCTCATTGCTGGGTGGGATGGTGTG
CTACAATGACGATGTAAAAGTACAATTAGAATACTGGTTATCACAACGTAATTTGAAAATGCCCGTTTATGCTCGGGCTG
GGTGGTATTTCTCATGA

Antitoxin


Download         Length: 356 a.a.        Molecular weight: 40781.94 Da        Isoelectric Point: 6.1827

>AT105181 WP_108900787.1 NZ_CP029185:c3591420-3590353 [Limnobaculum parvum]
MINYTQGNLLDAPVEALVNTVNTMGIMGKGIALMFKERFPNNMKAYSLACKQQQVTTGKMFITETGELMGPRWIVNFPTK
QHWRADSKIEWIEEGLQDLRRFLLEEQVNSIAIPPLGAGHGGLAWPSVRVQIENALADLHDIDIFIYEPTKKYQNVAKSS
GVKKLTPARAMIAELVRRYWVLGMECSLLEIQKLAWFLQRAIDLHHQEDVLKLPFESHYYGPYTPNLNHLLNALDGSYLK
SEKRIPDSQPLDVIWFNDREKDHINAYLHTEAKAWLPALEQVSELIDGFESPFGMELLATVDWLLTRENCQPTLVSVKEG
LRRWPAGERWACRKLELFDDNSLQFAIDRVMTFHS

Download         Length: 1068 bp

>AT105181 NZ_CP029185:c3591420-3590353 [Limnobaculum parvum]
ATGATTAATTATACACAAGGCAATTTGCTGGATGCACCTGTAGAAGCATTGGTGAATACGGTTAATACCATGGGGATCAT
GGGTAAAGGTATTGCTCTCATGTTTAAAGAGCGTTTTCCTAATAATATGAAGGCATATTCTCTTGCTTGCAAACAGCAGC
AGGTAACTACAGGGAAGATGTTTATTACTGAAACGGGTGAATTGATGGGGCCTCGTTGGATTGTTAATTTCCCAACTAAG
CAACATTGGCGAGCAGATTCCAAAATTGAATGGATTGAAGAAGGTTTACAAGACTTACGTCGTTTTCTACTCGAAGAACA
GGTGAACTCTATTGCTATTCCTCCTCTAGGGGCGGGGCATGGTGGCTTGGCATGGCCAAGCGTTAGAGTACAAATTGAAA
ATGCACTTGCTGACCTTCATGATATTGATATTTTTATTTATGAGCCAACAAAAAAGTATCAGAATGTTGCCAAAAGTAGC
GGCGTAAAAAAGCTTACACCAGCCAGAGCAATGATTGCTGAGCTGGTACGGCGTTATTGGGTTCTGGGTATGGAATGTAG
TTTGTTAGAAATTCAGAAACTAGCATGGTTTCTGCAGCGAGCCATCGATTTGCATCATCAGGAAGATGTGCTGAAGTTAC
CTTTTGAATCCCATTATTATGGACCATATACACCTAATCTAAATCATTTACTCAATGCACTGGACGGTAGTTATCTTAAA
TCGGAGAAACGTATACCGGATAGCCAACCTCTTGATGTTATTTGGTTCAACGATCGAGAAAAAGATCATATAAATGCTTA
TTTACATACAGAGGCTAAGGCATGGCTGCCAGCGCTTGAGCAGGTGAGTGAGCTGATTGATGGTTTTGAGTCTCCATTTG
GTATGGAGTTGTTGGCAACTGTTGATTGGCTGTTGACCCGTGAAAACTGTCAACCTACACTGGTTTCAGTTAAAGAAGGG
CTAAGAAGATGGCCAGCAGGGGAGCGTTGGGCTTGCCGAAAACTTGAATTGTTTGATGATAATAGTCTGCAATTTGCGAT
TGATCGAGTGATGACGTTTCATAGTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References