Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 599177..599704 Replicon chromosome
Accession NZ_CP029185
Organism Limnobaculum parvum strain HYN0051

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag HYN51_RS02095 Protein ID WP_108901324.1
Coordinates 599177..599443 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag HYN51_RS02100 Protein ID WP_108901325.1
Coordinates 599447..599704 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HYN51_RS02065 595054..595935 - 882 WP_108901319.1 U32 family peptidase -
HYN51_RS02070 595948..596943 - 996 WP_108901320.1 U32 family peptidase -
HYN51_RS02075 597254..597775 + 522 WP_108901321.1 SCP2 domain-containing protein -
HYN51_RS02080 597769..598272 + 504 WP_108901322.1 N-acetyltransferase -
HYN51_RS02085 598269..598616 - 348 WP_108901323.1 GIY-YIG nuclease family protein -
HYN51_RS02090 598727..599176 + 450 WP_108902126.1 YhbP family protein -
HYN51_RS02095 599177..599443 - 267 WP_108901324.1 type II toxin-antitoxin system YafQ family toxin Toxin
HYN51_RS02100 599447..599704 - 258 WP_108901325.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
HYN51_RS02105 599914..600378 - 465 WP_108901326.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
HYN51_RS02110 600509..602668 - 2160 WP_108901327.1 anaerobic ribonucleoside-triphosphate reductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(1-88)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10154.67 Da        Isoelectric Point: 9.8732

>T105177 WP_108901324.1 NZ_CP029185:c599443-599177 [Limnobaculum parvum]
MLTIVYQNRFKKDAKHYVNNRNAQRIILNTIAMLQTGQPLPAGYREHKLSGSYVGYLECHGSPDILLIYQRTDSELRLYR
VGSHSALF

Download         Length: 267 bp

>T105177 NZ_CP029185:c599443-599177 [Limnobaculum parvum]
ATGCTAACGATTGTTTATCAGAATCGATTTAAAAAAGACGCTAAACACTATGTAAATAATAGAAATGCGCAAAGGATCAT
CCTGAATACAATCGCCATGCTACAAACAGGCCAACCGCTACCAGCTGGCTACCGGGAGCATAAGTTATCCGGTAGCTATG
TTGGCTATCTAGAATGTCATGGATCTCCAGACATTCTATTGATTTATCAACGTACTGATTCAGAATTGAGACTATATCGG
GTTGGCAGCCATTCCGCGCTGTTTTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9164.72 Da        Isoelectric Point: 9.9512

>AT105177 WP_108901325.1 NZ_CP029185:c599704-599447 [Limnobaculum parvum]
MNDTIVKARVSPEIKAAAMANAKTLGLDLSTVIRLVVRQLAATGKIPEGLISPNKETLQAIKEFELGIGVHRANSVDELK
KDLGW

Download         Length: 258 bp

>AT105177 NZ_CP029185:c599704-599447 [Limnobaculum parvum]
ATGAATGATACAATCGTAAAAGCGCGAGTTTCACCAGAAATAAAGGCGGCAGCAATGGCAAATGCAAAAACACTGGGGTT
AGATTTATCTACCGTCATCCGACTGGTAGTCAGACAGTTAGCGGCAACGGGAAAAATACCAGAAGGTTTAATTAGCCCCA
ATAAAGAAACTCTTCAGGCAATTAAAGAGTTTGAACTGGGTATTGGAGTACACCGTGCTAACTCGGTAGATGAACTGAAA
AAAGATCTGGGATGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References