Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 599177..599704 Replicon chromosome
Accession NZ_CP029185
Organism Limnobaculum parvum strain HYN0051

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag HYN51_RS02095 Protein ID WP_108901324.1
Coordinates 599177..599443 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag HYN51_RS02100 Protein ID WP_108901325.1
Coordinates 599447..599704 (-) Length 86 a.a.

Genomic Context

HYN51_RS02075HYN51_RS02080HYN51_RS02090HYN51_RS02065HYN51_RS02070HYN51_RS02085HYN51_RS02095HYN51_RS02100HYN51_RS02105HYN51_RS02110
Location: 597254..597775 (522 bp)
Type: Others
Protein ID: WP_108901321.1
Location: 597769..598272 (504 bp)
Type: Others
Protein ID: WP_108901322.1
Location: 598727..599176 (450 bp)
Type: Others
Protein ID: WP_108902126.1
Location: 595054..595935 (882 bp)
Type: Others
Protein ID: WP_108901319.1
Location: 595948..596943 (996 bp)
Type: Others
Protein ID: WP_108901320.1
Location: 598269..598616 (348 bp)
Type: Others
Protein ID: WP_108901323.1
Location: 599177..599443 (267 bp)
Type: Toxin
Protein ID: WP_108901324.1
Location: 599447..599704 (258 bp)
Type: Antitoxin
Protein ID: WP_108901325.1
Location: 599914..600378 (465 bp)
Type: Others
Protein ID: WP_108901326.1
Location: 600509..602668 (2160 bp)
Type: Others
Protein ID: WP_108901327.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
HYN51_RS02065595054..595935-882WP_108901319.1U32 family peptidase-
HYN51_RS02070595948..596943-996WP_108901320.1U32 family peptidase-
HYN51_RS02075597254..597775+522WP_108901321.1SCP2 domain-containing protein-
HYN51_RS02080597769..598272+504WP_108901322.1N-acetyltransferase-
HYN51_RS02085598269..598616-348WP_108901323.1GIY-YIG nuclease family protein-
HYN51_RS02090598727..599176+450WP_108902126.1YhbP family protein-
HYN51_RS02095599177..599443-267WP_108901324.1type II toxin-antitoxin system YafQ family toxinToxin
HYN51_RS02100599447..599704-258WP_108901325.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
HYN51_RS02105599914..600378-465WP_108901326.1anaerobic ribonucleoside-triphosphate reductase-activating protein-
HYN51_RS02110600509..602668-2160WP_108901327.1anaerobic ribonucleoside-triphosphate reductase-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(1-88)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10154.67 Da        Isoelectric Point: 9.8732

>T105177 WP_108901324.1 NZ_CP029185:c599443-599177 [Limnobaculum parvum]
MLTIVYQNRFKKDAKHYVNNRNAQRIILNTIAMLQTGQPLPAGYREHKLSGSYVGYLECHGSPDILLIYQRTDSELRLYR
VGSHSALF

Download         Length: 267 bp

>T105177 NZ_CP029185:c599443-599177 [Limnobaculum parvum]
ATGCTAACGATTGTTTATCAGAATCGATTTAAAAAAGACGCTAAACACTATGTAAATAATAGAAATGCGCAAAGGATCAT
CCTGAATACAATCGCCATGCTACAAACAGGCCAACCGCTACCAGCTGGCTACCGGGAGCATAAGTTATCCGGTAGCTATG
TTGGCTATCTAGAATGTCATGGATCTCCAGACATTCTATTGATTTATCAACGTACTGATTCAGAATTGAGACTATATCGG
GTTGGCAGCCATTCCGCGCTGTTTTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9164.72 Da        Isoelectric Point: 9.9512

>AT105177 WP_108901325.1 NZ_CP029185:c599704-599447 [Limnobaculum parvum]
MNDTIVKARVSPEIKAAAMANAKTLGLDLSTVIRLVVRQLAATGKIPEGLISPNKETLQAIKEFELGIGVHRANSVDELK
KDLGW

Download         Length: 258 bp

>AT105177 NZ_CP029185:c599704-599447 [Limnobaculum parvum]
ATGAATGATACAATCGTAAAAGCGCGAGTTTCACCAGAAATAAAGGCGGCAGCAATGGCAAATGCAAAAACACTGGGGTT
AGATTTATCTACCGTCATCCGACTGGTAGTCAGACAGTTAGCGGCAACGGGAAAAATACCAGAAGGTTTAATTAGCCCCA
ATAAAGAAACTCTTCAGGCAATTAAAGAGTTTGAACTGGGTATTGGAGTACACCGTGCTAACTCGGTAGATGAACTGAAA
AAAGATCTGGGATGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References