Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Doc-RelB
Location 237271..237905 Replicon chromosome
Accession NZ_CP029185
Organism Limnobaculum parvum strain HYN0051

Toxin (Protein)


Gene name doc Uniprot ID -
Locus tag HYN51_RS00575 Protein ID WP_108901072.1
Coordinates 237271..237687 (-) Length 139 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID -
Locus tag HYN51_RS00580 Protein ID WP_108901073.1
Coordinates 237684..237905 (-) Length 74 a.a.

Genomic Context

HYN51_RS00540HYN51_RS00545HYN51_RS00550HYN51_RS00555HYN51_RS00560HYN51_RS00570HYN51_RS00585HYN51_RS00565HYN51_RS00575HYN51_RS00580HYN51_RS00590
Location: 232483..233277 (795 bp)
Type: Others
Protein ID: WP_108902108.1
Location: 233283..234152 (870 bp)
Type: Others
Protein ID: WP_157952942.1
Location: 234488..234865 (378 bp)
Type: Others
Protein ID: WP_108901067.1
Location: 234963..235124 (162 bp)
Type: Others
Protein ID: WP_157952943.1
Location: 235595..235759 (165 bp)
Type: Others
Protein ID: WP_157952944.1
Location: 236433..237029 (597 bp)
Type: Others
Protein ID: WP_108901071.1
Location: 238103..238345 (243 bp)
Type: Others
Protein ID: WP_108901074.1
Location: 235862..236248 (387 bp)
Type: Others
Protein ID: WP_108901070.1
Location: 237271..237687 (417 bp)
Type: Toxin
Protein ID: WP_108901072.1
Location: 237684..237905 (222 bp)
Type: Antitoxin
Protein ID: WP_108901073.1
Location: 238543..239406 (864 bp)
Type: Others
Protein ID: WP_108901075.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
HYN51_RS00540232483..233277+795WP_108902108.1outer membrane protein assembly factor BamE-
HYN51_RS00545233283..234152+870WP_157952942.1hypothetical protein-
HYN51_RS00550234488..234865+378WP_108901067.1BON domain-containing protein-
HYN51_RS00555234963..235124+162WP_157952943.1DUF1328 domain-containing protein-
HYN51_RS00560235595..235759+165WP_157952944.1hypothetical protein-
HYN51_RS00565235862..236248-387WP_108901070.1hypothetical protein-
HYN51_RS00570236433..237029+597WP_108901071.1hypothetical protein-
HYN51_RS00575237271..237687-417WP_108901072.1type II toxin-antitoxin system death-on-curing family toxinToxin
HYN51_RS00580237684..237905-222WP_108901073.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
HYN51_RS00585238103..238345+243WP_108901074.1transposase-
HYN51_RS00590238543..239406-864WP_108901075.1YicC family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Death on curing protein

(5-118)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-52)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 15756.81 Da        Isoelectric Point: 7.5196

>T105176 WP_108901072.1 NZ_CP029185:c237687-237271 [Limnobaculum parvum]
MIWVSAQEVIAFHDRILQRLPGVTGLSDPGRAEALIYRVQNRTHHEGVTDVFELAATYWVAIARGHIFNDDNKRTAFFVT
MAFLYRNGIKIRDNDNTLENLTVEAATGEKTTDQLAQHLRERVTILSQHVRHSRTPCT

Download         Length: 417 bp

>T105176 NZ_CP029185:c237687-237271 [Limnobaculum parvum]
ATGATATGGGTCAGCGCACAGGAAGTCATCGCTTTCCACGATCGCATATTGCAGCGGCTTCCCGGCGTTACAGGTCTATC
CGATCCCGGCAGAGCCGAAGCACTCATCTACCGGGTGCAAAACCGTACGCATCATGAAGGCGTTACCGATGTGTTTGAAC
TGGCCGCCACTTACTGGGTAGCTATTGCTCGTGGCCATATCTTTAATGATGACAATAAACGCACCGCATTTTTCGTTACT
ATGGCCTTTCTTTACCGCAACGGCATCAAGATCCGTGATAACGACAATACGCTGGAAAACTTAACGGTAGAGGCTGCGAC
AGGTGAGAAGACCACTGACCAATTAGCACAACATTTACGGGAGCGAGTGACAATTTTATCCCAACACGTTAGGCACTCTC
GTACTCCGTGTACTTAA

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8077.91 Da        Isoelectric Point: 5.5675

>AT105176 WP_108901073.1 NZ_CP029185:c237905-237684 [Limnobaculum parvum]
MRTYTSTQARANISEVLDAATHGEPVEITRRDGSSAVVISKAEFEAYQNAKLDAEFDAIMQRHGHTVEALTNR

Download         Length: 222 bp

>AT105176 NZ_CP029185:c237905-237684 [Limnobaculum parvum]
ATGCGTACATACACCTCAACCCAAGCCCGCGCTAATATCTCAGAAGTGCTGGATGCGGCCACTCATGGTGAACCGGTTGA
AATCACTCGCAGAGACGGCAGCTCCGCCGTCGTTATCAGCAAGGCTGAATTCGAGGCATACCAAAATGCTAAGTTGGATG
CGGAGTTTGATGCGATTATGCAGCGTCATGGGCATACGGTAGAGGCGCTGACCAACCGATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References