Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 329044..329315 Replicon chromosome
Accession NZ_CP029180
Organism Escherichia coli strain H9Ecoli

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 329174..329277 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 329044..329315 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DEF50_RS01880 325599..326261 - 663 WP_000944258.1 exodeoxyribonuclease X -
DEF50_RS01885 326285..326941 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein -
DEF50_RS01890 327043..327273 - 231 WP_000916763.1 DNA polymerase III subunit theta -
DEF50_RS01895 327412..327786 + 375 WP_000168747.1 CopC domain-containing protein YobA -
DEF50_RS01900 327790..328662 + 873 WP_000879295.1 copper homeostasis membrane protein CopD -
DEF50_RS01905 328675..329016 + 342 WP_000976472.1 YebY family protein -
- 329044..329315 - 272 - - Antitoxin
- 329174..329277 + 104 - - Toxin
DEF50_RS01910 329412..330068 + 657 WP_000812732.1 protein-serine/threonine phosphatase -
DEF50_RS01915 330069..330260 - 192 WP_001338167.1 YebW family protein -
DEF50_RS01920 330365..330601 - 237 WP_001338166.1 DUF1480 family protein -
DEF50_RS01925 330719..332158 - 1440 WP_001397399.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T105152 NZ_CP029180:329174-329277 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT105152 NZ_CP029180:c329315-329044 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References