Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2969392..2969660 | Replicon | chromosome |
| Accession | NZ_CP029164 | ||
| Organism | Escherichia coli strain 104 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2969520..2969622 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2969392..2969660 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDV95_RS15115 | 2965945..2966607 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DDV95_RS15120 | 2966631..2967287 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein | - |
| DDV95_RS15125 | 2967389..2967619 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| DDV95_RS15130 | 2967758..2968132 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DDV95_RS15135 | 2968136..2969008 | + | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| DDV95_RS15140 | 2969021..2969362 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2969392..2969660 | - | 269 | - | - | Antitoxin |
| - | 2969520..2969622 | + | 103 | - | - | Toxin |
| DDV95_RS15145 | 2969757..2970413 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| DDV95_RS15150 | 2970414..2970605 | - | 192 | WP_001317886.1 | YebW family protein | - |
| DDV95_RS15155 | 2970710..2970946 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DDV95_RS15160 | 2971064..2972503 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T105091 NZ_CP029164:2969520-2969622 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT105091 NZ_CP029164:c2969660-2969392 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
