Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3644482..3644627 | Replicon | chromosome |
| Accession | NZ_CP029137 | ||
| Organism | Klebsiella pneumoniae strain AR376 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3644489..3644591 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3644482..3644627 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC13_RS19810 | 3640013..3641446 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CSC13_RS19815 | 3641562..3641801 | + | 240 | WP_002911393.1 | YebV family protein | - |
| CSC13_RS19820 | 3641899..3642090 | + | 192 | WP_002911395.1 | YebW family protein | - |
| CSC13_RS19825 | 3642087..3642740 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CSC13_RS19830 | 3642897..3643865 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CSC13_RS29555 | 3643970..3644113 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3644482..3644627 | + | 146 | - | - | Antitoxin |
| - | 3644489..3644591 | - | 103 | - | - | Toxin |
| CSC13_RS19840 | 3644750..3645088 | - | 339 | WP_002911404.1 | YebY family protein | - |
| CSC13_RS19845 | 3645105..3645974 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| CSC13_RS19850 | 3645978..3646352 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CSC13_RS19855 | 3646465..3646695 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CSC13_RS19860 | 3646774..3647433 | + | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| CSC13_RS19865 | 3647437..3649497 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T105036 NZ_CP029137:c3644591-3644489 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT105036 NZ_CP029137:3644482-3644627 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
