Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5420946..5421091 | Replicon | chromosome |
| Accession | NZ_CP029128 | ||
| Organism | Klebsiella oxytoca strain AR380 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5420981..5421084 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5420946..5421091 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC17_RS26780 | 5416050..5418110 | + | 2061 | WP_016808307.1 | oligopeptidase B | - |
| CSC17_RS26785 | 5418117..5418776 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| CSC17_RS26790 | 5418855..5419085 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| CSC17_RS26795 | 5419221..5419595 | + | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| CSC17_RS26800 | 5419600..5420469 | + | 870 | WP_108704911.1 | copper homeostasis membrane protein CopD | - |
| CSC17_RS26805 | 5420486..5420824 | + | 339 | WP_023321222.1 | YebY family protein | - |
| - | 5420946..5421091 | - | 146 | - | - | Antitoxin |
| - | 5420981..5421084 | + | 104 | - | - | Toxin |
| CSC17_RS26810 | 5421211..5422170 | - | 960 | WP_004113762.1 | spore coat U domain-containing protein | - |
| CSC17_RS26815 | 5422182..5424515 | - | 2334 | WP_108704912.1 | fimbrial biogenesis outer membrane usher protein | - |
| CSC17_RS26820 | 5424518..5425282 | - | 765 | WP_016808303.1 | molecular chaperone | - |
| CSC17_RS26825 | 5425300..5425818 | - | 519 | WP_070557030.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 5348648..5439626 | 90978 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T105014 NZ_CP029128:5420981-5421084 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT105014 NZ_CP029128:c5421091-5420946 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
