Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1096324..1096533 | Replicon | chromosome |
| Accession | NZ_CP029126 | ||
| Organism | Enterobacter hormaechei strain AR432 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1096337..1096440 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1096324..1096533 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC19_RS05510 | 1092592..1094040 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CSC19_RS05515 | 1094147..1094386 | + | 240 | WP_003859885.1 | YebV family protein | - |
| CSC19_RS05520 | 1094421..1095065 | - | 645 | WP_063963076.1 | protein-serine/threonine phosphatase | - |
| CSC19_RS05525 | 1095233..1096213 | + | 981 | WP_045142106.1 | VirK/YbjX family protein | - |
| CSC19_RS05530 | 1096259..1096456 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 1096324..1096533 | + | 210 | - | - | Antitoxin |
| - | 1096337..1096440 | - | 104 | - | - | Toxin |
| CSC19_RS05535 | 1096582..1096920 | - | 339 | WP_003859787.1 | YebY family protein | - |
| CSC19_RS05540 | 1096937..1097806 | - | 870 | WP_045142107.1 | copper homeostasis membrane protein CopD | - |
| CSC19_RS05545 | 1097808..1098179 | - | 372 | WP_045142108.1 | CopC domain-containing protein YobA | - |
| CSC19_RS05550 | 1098317..1098547 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| CSC19_RS05555 | 1098659..1099309 | + | 651 | WP_045142109.1 | carbon-nitrogen hydrolase family protein | - |
| CSC19_RS05560 | 1099334..1099996 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T104989 NZ_CP029126:c1096440-1096337 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT104989 NZ_CP029126:1096324-1096533 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAGCCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAGCCGC
