104730

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN_Sll0205-like-Phd
Location 3110119..3110723 Replicon chromosome
Accession NZ_CP029065
Organism Mycobacterium tuberculosis strain TBMENG-03

Toxin (Protein)


Gene name vapC Uniprot ID P71623
Locus tag DDF83_RS15430 Protein ID WP_003414492.1
Coordinates 3110119..3110511 (-) Length 131 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A829CBY8
Locus tag DDF83_RS15435 Protein ID WP_003414495.1
Coordinates 3110508..3110723 (-) Length 72 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DDF83_RS15400 3105269..3106057 - 789 WP_003917092.1 CRISPR-associated endoribonuclease Cas6 -
DDF83_RS15405 3106391..3106936 - 546 WP_003904931.1 DUF1802 family protein -
DDF83_RS15410 3107208..3108092 - 885 WP_003414409.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
DDF83_RS15415 3108095..3108982 - 888 WP_003414414.1 type IV toxin-antitoxin system AbiEi family antitoxin -
DDF83_RS15420 3109287..3109832 - 546 WP_003908074.1 DUF1802 family protein -
DDF83_RS15425 3109829..3110098 - 270 WP_003414489.1 DUF2277 family protein -
DDF83_RS15430 3110119..3110511 - 393 WP_003414492.1 type II toxin-antitoxin system VapC family toxin Toxin
DDF83_RS15435 3110508..3110723 - 216 WP_003414495.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
DDF83_RS15440 3110770..3111519 + 750 WP_003908075.1 enoyl-CoA hydratase -
DDF83_RS15445 3111598..3112680 - 1083 WP_003908076.1 ABC transporter ATP-binding protein -
DDF83_RS15450 3112673..3113983 - 1311 WP_003414501.1 ABC transporter substrate-binding protein -
DDF83_RS15455 3113986..3114813 - 828 WP_003414504.1 carbohydrate ABC transporter permease -
DDF83_RS15460 3114810..3115721 - 912 WP_003904073.1 sugar ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

VapC-like Sll0205 protein, PIN domain

(5-130)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(2-46)


Sequences

Toxin        


Download         Length: 131 a.a.        Molecular weight: 14610.74 Da        Isoelectric Point: 6.7594

>T104730 WP_003414492.1 NZ_CP029065:c3110511-3110119 [Mycobacterium tuberculosis]
MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPVLSWLQQLAEHVRTVGITPSV
AATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRSHRHPRPVTVW

Download         Length: 393 bp

>T104730 NZ_CP029065:c3110511-3110119 [Mycobacterium tuberculosis]
ATGACGACGGTGCTGCTCGACTCGCATGTGGCCTACTGGTGGTCGGCCGAGCCGCAGCGTCTCAGCATGGCGGCGAGCCA
GGCCATCGAACACGCCGACGAGCTCGCCGTCGCCGCGATTTCGTGGTTCGAGCTGGCTTGGCTTGCCGAACAGGAACGCA
TCCAACTGGCGATTCCGGTGCTGTCCTGGCTTCAGCAGCTGGCCGAGCACGTTCGCACCGTCGGTATCACGCCCTCGGTC
GCCGCCACGGCGGTGGCGCTGCCCTCGTCGTTCCCCGGCGATCCGGCCGACCGGTTGATCTACGCCACCGCGATCGAACA
CGGCTGGCGGCTGGTGACCAAGGACCGGCGGCTACGCAGTCATCGGCACCCACGACCGGTCACCGTCTGGTAG

Antitoxin


Download         Length: 72 a.a.        Molecular weight: 7511.55 Da        Isoelectric Point: 4.9732

>AT104730 WP_003414495.1 NZ_CP029065:c3110723-3110508 [Mycobacterium tuberculosis]
MTATEVKAKILSLLDEVAQGEEIEITKHGRTVARLVAATGPHALKGRFSGVAMAAVDDDELFTTGVSWNVS

Download         Length: 216 bp

>AT104730 NZ_CP029065:c3110723-3110508 [Mycobacterium tuberculosis]
ATGACCGCTACGGAGGTGAAGGCGAAGATCCTCTCCTTGCTTGATGAAGTGGCCCAGGGCGAGGAGATCGAGATCACCAA
ACACGGCCGCACCGTGGCCCGGCTGGTGGCAGCGACGGGGCCGCACGCGCTGAAGGGTCGATTCTCGGGTGTGGCGATGG
CGGCCGTGGATGACGACGAACTCTTCACCACCGGGGTTTCGTGGAACGTTTCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BWM8

Antitoxin

Source ID Structure
AlphaFold DB A0A829CBY8

References