Detailed information of TA system TA104678

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): Rv0298-Rv0299/-
• Location: 362798..363324
• Replicon: chromosome
• Accession: NZ_CP029065
• Organism: Mycobacterium tuberculosis strain TBMENG-03

Toxin (Protein)

• Gene name: Rv0299
• Uniprot ID: -
• Locus tag: DDF83_RS01625
• Protein ID: WP_003401560.1
• Coordinates: 363022..363324 (+)
• Length: 101 a.a.

Antitoxin (Protein)

• Gene name: Rv0298
• Uniprot ID: P9WJ08
• Locus tag: DDF83_RS01620
• Protein ID: WP_003401555.1
• Coordinates: 362798..363025 (+)
• Length: 76 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
DDF83_RS01600	357846..358631	+	786	WP_003401538.1	trans-aconitate 2-methyltransferase	-
DDF83_RS01605	358620..359423	-	804	WP_003401540.1	hypothetical protein	-
DDF83_RS01610	359433..360830	-	1398	WP_003401544.1	sulfatase	-
DDF83_RS01615	361009..362655	+	1647	WP_031654185.1	PE family protein	-
DDF83_RS01620	362798..363025	+	228	WP_003401555.1	ribbon-helix-helix protein, CopG family	Antitoxin
DDF83_RS01625	363022..363324	+	303	WP_003401560.1	toxin-antitoxin system toxin	Toxin
DDF83_RS01630	363372..363593	+	222	WP_003401563.1	type II toxin-antitoxin system antitoxin VapB2	-
DDF83_RS01635	363590..364015	+	426	WP_003401566.1	PIN domain nuclease	-
DDF83_RS01640	364151..364783	+	633	WP_003401571.1	TetR/AcrR family transcriptional regulator	-
DDF83_RS01645	364780..365688	+	909	WP_003900117.1	SDR family NAD(P)-dependent oxidoreductase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Ribbon-helix-helix protein, CopG (6-41)

Sequences

Toxin

Protein

• Length: 101 a.a.
• Molecular weight: 10442.16 Da
• Isoelectric Point: 4.9609

>T104678 WP_003401560.1 NZ_CP029065:363022-363324 [Mycobacterium tuberculosis]
MIAPGDIAPRRDSEHELYVAVLSNALHRAADTGRVITCPFIPGRVPEDLLAMVVAVEQPNGTLLPELVQWLHVAALGAPL
GNAGVAALREAASVVTALLC

Nucleotide

• Length: 303 bp

>T104678 NZ_CP029065:363022-363324 [Mycobacterium tuberculosis]
TTGATCGCTCCCGGCGACATCGCGCCGCGCCGCGACAGTGAACACGAGCTCTACGTCGCCGTCTTGTCCAACGCGCTCCA
TCGGGCCGCGGACACCGGACGGGTGATCACCTGCCCATTCATTCCGGGCCGGGTCCCCGAGGATCTCTTGGCGATGGTGG
TGGCGGTCGAGCAACCCAACGGCACGCTGCTGCCGGAACTCGTGCAGTGGCTTCATGTTGCCGCGCTCGGTGCGCCACTC
GGCAACGCGGGCGTGGCCGCCCTACGCGAGGCTGCCTCGGTCGTGACAGCTCTGCTCTGTTAG

Antitoxin

Protein

• Length: 76 a.a.
• Molecular weight: 8130.21 Da
• Isoelectric Point: 7.0084

>AT104678 WP_003401555.1 NZ_CP029065:362798-363025 [Mycobacterium tuberculosis]
MTKEKISVTVDAAVLAAIDADARAAGLNRSEMIEQALRNEHLRVALRDYTAKTVPALDIDAYAQRVYQANRAAGS

Nucleotide

• Length: 228 bp

>AT104678 NZ_CP029065:362798-363025 [Mycobacterium tuberculosis]
ATGACGAAAGAGAAGATCTCCGTGACGGTGGACGCGGCCGTCCTCGCGGCGATCGACGCGGACGCCAGGGCGGCGGGTTT
GAATCGGTCGGAAATGATTGAGCAGGCACTGCGCAACGAGCACCTGCGTGTCGCTCTGCGCGATTACACGGCTAAAACCG
TACCGGCGTTGGACATCGATGCCTACGCACAGCGGGTGTACCAGGCGAACCGGGCGGCCGGAAGTTGA

Structures

Antitoxin

• AlphaFold DB: A0A7U4F8T1