Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 865522..866156 Replicon chromosome
Accession NZ_CP029049
Organism Miniimonas sp. S16

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag DCS86_RS03830 Protein ID WP_108719963.1
Coordinates 865522..865902 (-) Length 127 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag DCS86_RS03835 Protein ID WP_108717888.1
Coordinates 865899..866156 (-) Length 86 a.a.

Genomic Context

DCS86_RS16525DCS86_RS03815DCS86_RS03845DCS86_RS03820DCS86_RS03825DCS86_RS03830DCS86_RS03835DCS86_RS03840
Location: 861674..863272 (1599 bp)
Type: Others
Protein ID: WP_159096365.1
Location: 863277..863684 (408 bp)
Type: Others
Protein ID: WP_108717886.1
Location: 868218..871148 (2931 bp)
Type: Others
Protein ID: WP_159096366.1
Location: 863928..864644 (717 bp)
Type: Others
Protein ID: WP_108719962.1
Location: 864738..865490 (753 bp)
Type: Others
Protein ID: WP_108717887.1
Location: 865522..865902 (381 bp)
Type: Toxin
Protein ID: WP_108719963.1
Location: 865899..866156 (258 bp)
Type: Antitoxin
Protein ID: WP_108717888.1
Location: 866176..867852 (1677 bp)
Type: Others
Protein ID: WP_108717889.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
DCS86_RS16525861674..863272+1599WP_159096365.1hypothetical protein-
DCS86_RS03815863277..863684+408WP_108717886.1hypothetical protein-
DCS86_RS03820863928..864644-717WP_108719962.1alpha/beta hydrolase-
DCS86_RS03825864738..865490-753WP_108717887.1alpha/beta hydrolase-
DCS86_RS03830865522..865902-381WP_108719963.1type II toxin-antitoxin system VapC family toxinToxin
DCS86_RS03835865899..866156-258WP_108717888.1ribbon-helix-helix protein, CopG familyAntitoxin
DCS86_RS03840866176..867852-1677WP_108717889.1ATP-binding cassette domain-containing protein-
DCS86_RS03845868218..871148+2931WP_159096366.1rhamnogalacturonan lyase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-111)

Antitoxin

Ribbon-helix-helix protein, CopG

(3-39)


Sequences

Toxin        


Download         Length: 127 a.a.        Molecular weight: 13343.28 Da        Isoelectric Point: 6.0723

>T104636 WP_108719963.1 NZ_CP029049:c865902-865522 [Miniimonas sp. S16]
VILVDSDVLIAHLRGVASARDWLRDAPAETLTVSAVTVAEVTGGMRESEERAVTALLGVLPTVPVTDPVARRAGALRRAF
DRSHSGIALGDYLIAATALEHGFQLATLNTRHFSMFPGLEPPFAVG

Download         Length: 381 bp

>T104636 NZ_CP029049:c865902-865522 [Miniimonas sp. S16]
GTGATCCTGGTCGACTCCGACGTCCTCATCGCCCACCTGCGGGGCGTCGCGAGCGCCCGCGACTGGTTGCGCGACGCGCC
GGCGGAGACGCTGACGGTCAGCGCGGTGACCGTGGCCGAGGTGACGGGTGGGATGCGGGAGTCGGAGGAGCGCGCCGTCA
CCGCACTGCTCGGGGTGCTCCCGACCGTTCCGGTCACCGATCCGGTCGCGCGGCGAGCCGGCGCGTTGCGTCGCGCGTTC
GACCGCAGCCACTCGGGCATCGCGCTGGGGGACTACCTCATCGCGGCCACGGCCCTCGAGCACGGCTTCCAGCTGGCTAC
GCTCAACACGCGCCACTTCTCGATGTTCCCCGGCCTCGAGCCGCCGTTCGCCGTCGGCTGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9343.46 Da        Isoelectric Point: 5.1599

>AT104636 WP_108717888.1 NZ_CP029049:c866156-865899 [Miniimonas sp. S16]
MQRTNIFLEERQTDSLDAMARLEGVSRAEVIRRIIDRAIDGEGNAEARRRAAIDLSFGAAARIAVERGADDARAAQLASM
WGRDA

Download         Length: 258 bp

>AT104636 NZ_CP029049:c866156-865899 [Miniimonas sp. S16]
ATGCAGCGCACCAACATCTTCCTCGAGGAGCGACAGACGGACTCGCTGGACGCGATGGCGCGCCTCGAGGGTGTCTCGCG
CGCCGAGGTGATCCGCCGGATCATCGACCGCGCGATCGACGGCGAGGGGAACGCCGAGGCGCGTCGACGCGCCGCGATCG
ACCTCTCCTTCGGTGCCGCCGCCCGGATCGCCGTGGAGCGGGGCGCCGACGACGCGCGCGCGGCCCAGCTCGCGAGCATG
TGGGGTCGGGACGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References