Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3822410..3822555 | Replicon | chromosome |
| Accession | NZ_CP028994 | ||
| Organism | Klebsiella pneumoniae strain AR_0079 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3822417..3822519 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3822410..3822555 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM458_RS19475 | 3817941..3819374 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM458_RS19480 | 3819490..3819729 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM458_RS19485 | 3819827..3820018 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM458_RS19490 | 3820015..3820668 | - | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| AM458_RS19495 | 3820825..3821793 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| AM458_RS32235 | 3821898..3822041 | + | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| - | 3822410..3822555 | + | 146 | - | - | Antitoxin |
| - | 3822417..3822519 | - | 103 | - | - | Toxin |
| AM458_RS19505 | 3822678..3823016 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AM458_RS19510 | 3823033..3823902 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| AM458_RS19515 | 3823906..3824280 | - | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| AM458_RS19520 | 3824393..3824623 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM458_RS19525 | 3824702..3825361 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM458_RS19530 | 3825365..3827425 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T104565 NZ_CP028994:c3822519-3822417 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT104565 NZ_CP028994:3822410-3822555 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
