Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 774676..774821 | Replicon | chromosome |
| Accession | NZ_CP028990 | ||
| Organism | Klebsiella pneumoniae strain AR_0142 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 774712..774814 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 774676..774821 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM389_RS03695 | 769806..771866 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| AM389_RS03700 | 771870..772529 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM389_RS03705 | 772608..772838 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM389_RS03710 | 772951..773325 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM389_RS03715 | 773329..774198 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| AM389_RS03720 | 774215..774553 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 774676..774821 | - | 146 | - | - | Antitoxin |
| - | 774712..774814 | + | 103 | - | - | Toxin |
| AM389_RS28065 | 775190..775333 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AM389_RS03730 | 775438..776406 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM389_RS03735 | 776563..777216 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| AM389_RS03740 | 777213..777404 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AM389_RS03745 | 777502..777741 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AM389_RS03750 | 777857..779290 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T104538 NZ_CP028990:774712-774814 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT104538 NZ_CP028990:c774821-774676 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
