Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 717549..717694 | Replicon | chromosome |
| Accession | NZ_CP028953 | ||
| Organism | Klebsiella pneumoniae strain AR_0141 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 717585..717687 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 717549..717694 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM388_RS03435 | 712679..714739 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| AM388_RS03440 | 714743..715402 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM388_RS03445 | 715481..715711 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM388_RS03450 | 715824..716198 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM388_RS03455 | 716202..717071 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| AM388_RS03460 | 717088..717426 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 717549..717694 | - | 146 | - | - | Antitoxin |
| - | 717585..717687 | + | 103 | - | - | Toxin |
| AM388_RS28630 | 718063..718206 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AM388_RS03470 | 718311..719279 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM388_RS03475 | 719436..720089 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| AM388_RS03480 | 720086..720277 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AM388_RS03485 | 720375..720614 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AM388_RS03490 | 720730..722163 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T104485 NZ_CP028953:717585-717687 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT104485 NZ_CP028953:c717694-717549 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
