Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4972447..4972592 | Replicon | chromosome |
| Accession | NZ_CP028932 | ||
| Organism | Klebsiella pneumoniae strain AR_0153 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4972483..4972585 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4972447..4972592 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM400_RS27410 | 4967577..4969637 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| AM400_RS27415 | 4969641..4970300 | - | 660 | WP_043906809.1 | exodeoxyribonuclease X | - |
| AM400_RS27420 | 4970379..4970609 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM400_RS27425 | 4970722..4971096 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM400_RS27430 | 4971100..4971969 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| AM400_RS27435 | 4971986..4972324 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4972447..4972592 | - | 146 | - | - | Antitoxin |
| - | 4972483..4972585 | + | 103 | - | - | Toxin |
| AM400_RS29470 | 4972961..4973104 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AM400_RS27445 | 4973209..4974177 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM400_RS27450 | 4974334..4974987 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| AM400_RS27455 | 4974984..4975175 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AM400_RS27460 | 4975273..4975512 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AM400_RS27465 | 4975628..4977061 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T104394 NZ_CP028932:4972483-4972585 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT104394 NZ_CP028932:c4972592-4972447 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
