Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 2939033..2939658 Replicon chromosome
Accession NZ_CP028932
Organism Klebsiella pneumoniae strain AR_0153

Toxin (Protein)


Gene name vapC Uniprot ID R4Y4A3
Locus tag AM400_RS17505 Protein ID WP_002882817.1
Coordinates 2939275..2939658 (+) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID J2DFR0
Locus tag AM400_RS17500 Protein ID WP_004150355.1
Coordinates 2939033..2939275 (+) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AM400_RS17475 2935024..2935623 + 600 WP_004151865.1 glucose-1-phosphatase -
AM400_RS17480 2935617..2936477 + 861 WP_004146232.1 virulence factor BrkB family protein -
AM400_RS17485 2936474..2936911 + 438 WP_002882809.1 D-tyrosyl-tRNA(Tyr) deacylase -
AM400_RS17490 2936956..2937897 + 942 WP_004178031.1 fatty acid biosynthesis protein FabY -
AM400_RS17495 2937911..2938828 - 918 WP_004181612.1 alpha/beta hydrolase -
AM400_RS17500 2939033..2939275 + 243 WP_004150355.1 ribbon-helix-helix domain-containing protein Antitoxin
AM400_RS17505 2939275..2939658 + 384 WP_002882817.1 type II toxin-antitoxin system VapC family toxin Toxin
AM400_RS17510 2939832..2940761 - 930 WP_004150358.1 formate dehydrogenase accessory protein FdhE -
AM400_RS17515 2940758..2941393 - 636 WP_002882818.1 formate dehydrogenase cytochrome b556 subunit -
AM400_RS17520 2941390..2942292 - 903 WP_002882822.1 formate dehydrogenase subunit beta -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-112)

Antitoxin

Predicted DNA-binding protein, ribbon-helix-helix domain

(16-47)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14377.62 Da        Isoelectric Point: 7.3178

>T104388 WP_002882817.1 NZ_CP028932:2939275-2939658 [Klebsiella pneumoniae]
MTSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL
RQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE

Download         Length: 384 bp

>T104388 NZ_CP028932:2939275-2939658 [Klebsiella pneumoniae]
ATGACCTCCGGATCTGCGCTTTTTGATACCAATATTCTTATTGATTTATTTAGCGGGCGTCGCGAAGCCAAACAGGCGCT
GGAGGCCTGGCCACCGCAGAATGCGATCAGTCTGATTACCTGGATGGAGGTGATGGTTGGCGCTAAAAAATATCACCAGG
AGCAGCGCACGCGAATGGCGCTGAGCACCTTTAATATCATTAACATCTCACAGGATATTGCAGAGCGAAGCGTTGCGCTG
CGGCAGGAGTATAAGCTTAAGCTGCCGGATGCCATCATTCTGGCGACGGCGCAACTCCATCGTCTGGAACTAATTACGCG
GAATACGAAGGATTTTGCCGGTATTCCTGGCGTAGTCACGCCGTACGAAATCCACCCTGAATAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9567.83 Da        Isoelectric Point: 4.3509

>AT104388 WP_004150355.1 NZ_CP028932:2939033-2939275 [Klebsiella pneumoniae]
MMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRKEW

Download         Length: 243 bp

>AT104388 NZ_CP028932:2939033-2939275 [Klebsiella pneumoniae]
ATGATGGCTGAAAGGGATATGGGCAGAATTCTTCTCGATTTATCAGACGATGTCATTCAACGTCTCGATGACCTCAAAGT
GCAGCGTAACATTCCGCGAGCGGAACTGTTACGTGAAGCGGTTGAACAATATCTGGAGAAACAAGATCGAGCTAAAGATA
CCATCTCCAGTGCGCTGGGTCTGTGGCAAGACTGCGAAGAAGACGGCATGGAATATCAACGTCAGCTACGCAAGGAGTGG
TAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GPK8

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GGU9

References