Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2288860..2289005 | Replicon | chromosome |
| Accession | NZ_CP028850 | ||
| Organism | Klebsiella pneumoniae strain 3214 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2288896..2288998 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2288860..2289005 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBX64_RS10860 | 2283990..2286050 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| DBX64_RS10865 | 2286054..2286713 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DBX64_RS10870 | 2286792..2287022 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DBX64_RS10875 | 2287135..2287509 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DBX64_RS10880 | 2287513..2288382 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| DBX64_RS10885 | 2288399..2288737 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2288860..2289005 | - | 146 | - | - | Antitoxin |
| - | 2288896..2288998 | + | 103 | - | - | Toxin |
| DBX64_RS10890 | 2289373..2289516 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| DBX64_RS10895 | 2289621..2290589 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| DBX64_RS10900 | 2290746..2291399 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| DBX64_RS10905 | 2291396..2291587 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DBX64_RS10910 | 2291685..2291924 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DBX64_RS10915 | 2292040..2293473 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T104300 NZ_CP028850:2288896-2288998 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT104300 NZ_CP028850:c2289005-2288860 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
