Detailed information of TA system TA104289

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): parDE/RHH(antitoxin)
• Location: 142004..142509
• Replicon: chromosome
• Accession: NZ_CP028849
• Organism: Pseudomonas aeruginosa strain IMP68

Toxin (Protein)

• Gene name: parE
• Uniprot ID: V6A7K8
• Locus tag: DBZ62_RS00650
• Protein ID: WP_003083773.1
• Coordinates: 142004..142285 (-)
• Length: 94 a.a.

Antitoxin (Protein)

• Gene name: parD
• Uniprot ID: A0A1C7BDS9
• Locus tag: DBZ62_RS00655
• Protein ID: WP_003083775.1
• Coordinates: 142282..142509 (-)
• Length: 76 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
DBZ62_RS00625	137255..138604	+	1350	WP_003142411.1	C4-dicarboxylate transporter DctA	-
DBZ62_RS00630	138653..139339	+	687	WP_003083762.1	FadR family transcriptional regulator	-
DBZ62_RS00635	139440..140174	+	735	WP_003117208.1	GntR family transcriptional regulator	-
DBZ62_RS00640	140378..140764	+	387	WP_014602345.1	aegerolysin family protein	-
DBZ62_RS00645	140796..141704	-	909	WP_016561475.1	LysR family transcriptional regulator	-
DBZ62_RS00650	142004..142285	-	282	WP_003083773.1	type II toxin-antitoxin system toxin ParE	Toxin
DBZ62_RS00655	142282..142509	-	228	WP_003083775.1	CopG family ribbon-helix-helix protein	Antitoxin
DBZ62_RS00660	142685..143305	-	621	WP_003101226.1	hypothetical protein	-
DBZ62_RS00665	143406..143906	+	501	WP_003112629.1	LEA type 2 family protein	-
DBZ62_RS00670	143979..144320	+	342	WP_003101229.1	alkylphosphonate utilization protein	-
DBZ62_RS00675	144402..145829	-	1428	WP_003083784.1	GABA permease	-
DBZ62_RS00680	145998..147491	-	1494	WP_003101230.1	CoA-acylating methylmalonate-semialdehyde dehydrogenase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (3-87)

Antitoxin

• Ribbon-helix-helix protein, CopG (5-42)

Sequences

Toxin

Protein

• Length: 94 a.a.
• Molecular weight: 10462.19 Da
• Isoelectric Point: 10.0435

>T104289 WP_003083773.1 NZ_CP028849:c142285-142004 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP

Nucleotide

• Length: 282 bp

>T104289 NZ_CP028849:c142285-142004 [Pseudomonas aeruginosa]
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCTCTGAAAGCCGTTCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGGAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTTAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTGA

Antitoxin

Protein

• Length: 76 a.a.
• Molecular weight: 8556.58 Da
• Isoelectric Point: 5.5740

>AT104289 WP_003083775.1 NZ_CP028849:c142509-142282 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHTEIEKRWGLQ

Nucleotide

• Length: 228 bp

>AT104289 NZ_CP028849:c142509-142282 [Pseudomonas aeruginosa]
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCCTACCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACACCGAGATCGAGAAGCGCTGGGGGCTGCAATGA

Structures

Toxin

• PDB: 6XRW

Antitoxin

• AlphaFold DB: A0A1C7BDS9