Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1951447..1951592 | Replicon | chromosome |
| Accession | NZ_CP028806 | ||
| Organism | Klebsiella pneumoniae strain WCHKP7E2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1951483..1951585 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1951447..1951592 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7D49_RS12810 | 1946577..1948637 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| B7D49_RS12815 | 1948641..1949300 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| B7D49_RS12820 | 1949379..1949609 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| B7D49_RS12825 | 1949722..1950096 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| B7D49_RS12830 | 1950100..1950969 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| B7D49_RS12835 | 1950983..1951324 | + | 342 | WP_085802964.1 | YebY family protein | - |
| - | 1951447..1951592 | - | 146 | - | - | Antitoxin |
| - | 1951483..1951585 | + | 103 | - | - | Toxin |
| B7D49_RS12840 | 1951627..1951818 | - | 192 | WP_004189271.1 | hypothetical protein | - |
| B7D49_RS12845 | 1952208..1953098 | - | 891 | WP_085353163.1 | VirK/YbjX family protein | - |
| B7D49_RS12850 | 1953333..1953986 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| B7D49_RS12855 | 1953983..1954174 | - | 192 | WP_002911395.1 | YebW family protein | - |
| B7D49_RS12860 | 1954272..1954511 | - | 240 | WP_002911393.1 | YebV family protein | - |
| B7D49_RS12865 | 1954627..1956060 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T104211 NZ_CP028806:1951483-1951585 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT104211 NZ_CP028806:c1951592-1951447 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
