Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3046166..3046311 | Replicon | chromosome |
| Accession | NZ_CP028797 | ||
| Organism | Klebsiella pneumoniae strain WCHKP040035 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3046173..3046275 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3046166..3046311 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6M51_RS17085 | 3041698..3043131 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6M51_RS17090 | 3043247..3043486 | + | 240 | WP_002911393.1 | YebV family protein | - |
| C6M51_RS17095 | 3043584..3043775 | + | 192 | WP_002911395.1 | YebW family protein | - |
| C6M51_RS17100 | 3043772..3044425 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| C6M51_RS17105 | 3044660..3045550 | + | 891 | WP_085353163.1 | VirK/YbjX family protein | - |
| C6M51_RS17110 | 3045940..3046131 | + | 192 | WP_004175432.1 | hypothetical protein | - |
| - | 3046166..3046311 | + | 146 | - | - | Antitoxin |
| - | 3046173..3046275 | - | 103 | - | - | Toxin |
| C6M51_RS17115 | 3046434..3046775 | - | 342 | WP_015874944.1 | YebY family protein | - |
| C6M51_RS17120 | 3046789..3047658 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| C6M51_RS17125 | 3047662..3048036 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C6M51_RS17130 | 3048149..3048379 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C6M51_RS17135 | 3048458..3049117 | + | 660 | WP_101963436.1 | exodeoxyribonuclease X | - |
| C6M51_RS17140 | 3049121..3051181 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T104183 NZ_CP028797:c3046275-3046173 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT104183 NZ_CP028797:3046166-3046311 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
