Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1937692..1937837 | Replicon | chromosome |
| Accession | NZ_CP028787 | ||
| Organism | Klebsiella pneumoniae strain SCKP020049 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1937728..1937830 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1937692..1937837 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLQ68_RS11160 | 1932822..1934882 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CLQ68_RS11165 | 1934886..1935545 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| CLQ68_RS11170 | 1935624..1935854 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CLQ68_RS11175 | 1935967..1936341 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CLQ68_RS11180 | 1936345..1937214 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| CLQ68_RS11185 | 1937231..1937569 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1937692..1937837 | - | 146 | - | - | Antitoxin |
| - | 1937728..1937830 | + | 103 | - | - | Toxin |
| CLQ68_RS28035 | 1938206..1938349 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CLQ68_RS11195 | 1938454..1939422 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CLQ68_RS11200 | 1939579..1940232 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| CLQ68_RS11205 | 1940229..1940420 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CLQ68_RS11210 | 1940518..1940757 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CLQ68_RS11215 | 1940873..1942306 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1872891..1955234 | 82343 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T104131 NZ_CP028787:1937728-1937830 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT104131 NZ_CP028787:c1937837-1937692 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
