Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2157066..2157337 | Replicon | chromosome |
| Accession | NZ_CP028772 | ||
| Organism | Escherichia coli strain A2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2157196..2157299 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2157066..2157337 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY53_RS10530 | 2153621..2154283 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY53_RS10535 | 2154307..2154963 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY53_RS10540 | 2155065..2155295 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY53_RS10545 | 2155434..2155808 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AOY53_RS10550 | 2155812..2156684 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| AOY53_RS10555 | 2156697..2157038 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2157066..2157337 | - | 272 | - | - | Antitoxin |
| - | 2157196..2157299 | + | 104 | - | - | Toxin |
| AOY53_RS10560 | 2157434..2158090 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| AOY53_RS10565 | 2158091..2158282 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AOY53_RS10570 | 2158387..2158623 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY53_RS10575 | 2158741..2160180 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T104091 NZ_CP028772:2157196-2157299 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT104091 NZ_CP028772:c2157337-2157066 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
