Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2282820..2283088 | Replicon | chromosome |
| Accession | NZ_CP028770 | ||
| Organism | Escherichia coli strain A4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2282948..2283050 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2282820..2283088 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY55_RS10685 | 2279374..2280036 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY55_RS10690 | 2280059..2280715 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY55_RS10695 | 2280817..2281047 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY55_RS10700 | 2281186..2281560 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY55_RS10705 | 2281564..2282436 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| AOY55_RS10710 | 2282449..2282790 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2282820..2283088 | - | 269 | - | - | Antitoxin |
| - | 2282948..2283050 | + | 103 | - | - | Toxin |
| AOY55_RS10715 | 2283185..2283841 | + | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| AOY55_RS10720 | 2283842..2284033 | - | 192 | WP_001317886.1 | YebW family protein | - |
| AOY55_RS10725 | 2284138..2284374 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY55_RS10730 | 2284492..2285931 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T104040 NZ_CP028770:2282948-2283050 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT104040 NZ_CP028770:c2283088-2282820 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
