Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2029124..2029395 | Replicon | chromosome |
| Accession | NZ_CP028769 | ||
| Organism | Escherichia coli strain A5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2029254..2029357 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2029124..2029395 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY56_RS09720 | 2025679..2026341 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY56_RS09725 | 2026365..2027021 | - | 657 | WP_087599297.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY56_RS09730 | 2027123..2027353 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY56_RS09735 | 2027492..2027866 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AOY56_RS09740 | 2027870..2028742 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| AOY56_RS09745 | 2028755..2029096 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2029124..2029395 | - | 272 | - | - | Antitoxin |
| - | 2029254..2029357 | + | 104 | - | - | Toxin |
| AOY56_RS09750 | 2029492..2030148 | + | 657 | WP_087599296.1 | protein-serine/threonine phosphatase | - |
| AOY56_RS09755 | 2030149..2030340 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AOY56_RS09760 | 2030445..2030681 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY56_RS09765 | 2030799..2032238 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T104014 NZ_CP028769:2029254-2029357 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT104014 NZ_CP028769:c2029395-2029124 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
