Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2719843..2720114 | Replicon | chromosome |
| Accession | NZ_CP028767 | ||
| Organism | Escherichia coli strain A7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2719881..2719984 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2719843..2720114 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY58_RS12845 | 2717000..2718439 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY58_RS12850 | 2718557..2718793 | + | 237 | WP_097344021.1 | YebV family protein | - |
| AOY58_RS12855 | 2718898..2719089 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AOY58_RS12860 | 2719090..2719746 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2719843..2720114 | + | 272 | - | - | Antitoxin |
| - | 2719881..2719984 | - | 104 | - | - | Toxin |
| AOY58_RS12865 | 2720142..2720483 | - | 342 | WP_000976492.1 | YebY family protein | - |
| AOY58_RS12870 | 2720496..2721368 | - | 873 | WP_000879273.1 | copper homeostasis membrane protein CopD | - |
| AOY58_RS12875 | 2721372..2721746 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY58_RS12880 | 2721885..2722115 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY58_RS12885 | 2722217..2722873 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY58_RS12890 | 2722897..2723559 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103970 NZ_CP028767:c2719984-2719881 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103970 NZ_CP028767:2719843-2720114 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
