Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2176798..2177066 | Replicon | chromosome |
| Accession | NZ_CP028764 | ||
| Organism | Escherichia coli strain A10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2176925..2177028 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2176798..2177066 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY63_RS10240 | 2173351..2174013 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY63_RS10245 | 2174037..2174693 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY63_RS10250 | 2174795..2175025 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY63_RS10255 | 2175164..2175538 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY63_RS10260 | 2175542..2176414 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| AOY63_RS10265 | 2176427..2176768 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2176798..2177066 | - | 269 | - | - | Antitoxin |
| - | 2176925..2177028 | + | 104 | - | - | Toxin |
| AOY63_RS10270 | 2177163..2177819 | + | 657 | WP_201477176.1 | protein-serine/threonine phosphatase | - |
| AOY63_RS10275 | 2177820..2178011 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AOY63_RS10280 | 2178116..2178352 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY63_RS10285 | 2178470..2179909 | - | 1440 | WP_024174147.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2153005..2192906 | 39901 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103890 NZ_CP028764:2176925-2177028 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT103890 NZ_CP028764:c2177066-2176798 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
