Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2014846..2015117 | Replicon | chromosome |
| Accession | NZ_CP028763 | ||
| Organism | Escherichia coli strain A11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2014976..2015079 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2014846..2015117 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY64_RS09565 | 2011401..2012063 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY64_RS09570 | 2012087..2012743 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY64_RS09575 | 2012845..2013075 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY64_RS09580 | 2013214..2013588 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| AOY64_RS09585 | 2013592..2014464 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| AOY64_RS09590 | 2014477..2014818 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2014846..2015117 | - | 272 | - | - | Antitoxin |
| - | 2014976..2015079 | + | 104 | - | - | Toxin |
| AOY64_RS09595 | 2015214..2015870 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| AOY64_RS09600 | 2015871..2016062 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AOY64_RS09605 | 2016167..2016403 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY64_RS09610 | 2016521..2017960 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103868 NZ_CP028763:2014976-2015079 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103868 NZ_CP028763:c2015117-2014846 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
